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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNA
NGIRFDPEIPQTLRLEFAKANTKAKNKLV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5cyj-a1-m1-cB 89 89 1.0000 1.0000 1.0000 2.91e-60 5cyj-a1-m1-cA_5cyj-a1-m1-cB
2 5cyj-a1-m1-cA 89 89 1.0000 1.0000 1.0000 2.91e-60 5cyj-a1-m1-cA_5cyj-a1-m1-cB
3 5det-a1-m1-cA 91 91 1.0000 0.9780 0.9780 9.07e-57 5det-a1-m1-cA_5det-a1-m1-cB
4 5det-a1-m1-cB 94 91 1.0000 0.9468 0.9780 1.17e-56 5det-a1-m1-cA_5det-a1-m1-cB
5 5tkz-a1-m1-cB 89 88 0.6292 0.6292 0.6364 6.99e-33 5tkz-a1-m1-cA_5tkz-a1-m1-cB
6 5tkz-a1-m1-cA 89 88 0.6292 0.6292 0.6364 6.99e-33 5tkz-a1-m1-cA_5tkz-a1-m1-cB
7 5bjr-a2-m3-cB 84 84 0.5955 0.6310 0.6310 3.03e-30 5bjr-a2-m1-cB_5bjr-a2-m3-cB
8 5bjr-a2-m1-cB 84 84 0.5955 0.6310 0.6310 3.03e-30 5bjr-a2-m1-cB_5bjr-a2-m3-cB
9 5ca5-a1-m1-cB 248 56 0.2360 0.0847 0.3750 0.027 5ca5-a1-m1-cA_5ca5-a1-m1-cB
10 5ca5-a1-m1-cA 248 56 0.2360 0.0847 0.3750 0.027 5ca5-a1-m1-cA_5ca5-a1-m1-cB
11 7sp0-a1-m1-cB 244 81 0.3034 0.1107 0.3333 0.039 7sp0-a1-m1-cB_7sp0-a1-m1-cA
12 5ifm-a1-m1-cA 254 53 0.2135 0.0748 0.3585 0.20 5ifm-a1-m1-cA_5ifm-a1-m1-cB
13 5ifm-a1-m1-cB 259 53 0.2135 0.0734 0.3585 0.21 5ifm-a1-m1-cA_5ifm-a1-m1-cB
14 3md3-a2-m2-cA 165 64 0.2022 0.1091 0.2812 0.23 3md3-a2-m1-cA_3md3-a2-m2-cA
15 3md3-a2-m1-cA 165 64 0.2022 0.1091 0.2812 0.23 3md3-a2-m1-cA_3md3-a2-m2-cA
16 5ifn-a1-m1-cB 252 53 0.2135 0.0754 0.3585 0.23 5ifn-a1-m1-cB_5ifn-a1-m1-cA
17 5ifn-a1-m1-cA 257 53 0.2135 0.0739 0.3585 0.25 5ifn-a1-m1-cB_5ifn-a1-m1-cA
18 3md1-a4-m5-cB 79 60 0.2022 0.2278 0.3000 0.26 3md1-a4-m4-cB_3md1-a4-m5-cB
19 3md1-a4-m4-cB 79 60 0.2022 0.2278 0.3000 0.26 3md1-a4-m4-cB_3md1-a4-m5-cB
20 7sp0-a1-m1-cA 253 53 0.2247 0.0791 0.3774 0.34 7sp0-a1-m1-cB_7sp0-a1-m1-cA
21 3qua-a1-m1-cB 179 26 0.1236 0.0615 0.4231 5.9 3qua-a1-m1-cA_3qua-a1-m1-cB
22 3qua-a1-m1-cA 179 26 0.1236 0.0615 0.4231 5.9 3qua-a1-m1-cA_3qua-a1-m1-cB
23 2fon-a2-m2-cC 653 61 0.2247 0.0306 0.3279 9.4 2fon-a2-m1-cC_2fon-a2-m2-cC
24 2fon-a2-m1-cC 653 61 0.2247 0.0306 0.3279 9.4 2fon-a2-m1-cC_2fon-a2-m2-cC
25 6npl-a1-m1-cB 861 29 0.1348 0.0139 0.4138 9.8 6npl-a1-m1-cA_6npl-a1-m1-cB
26 6npl-a1-m1-cA 861 29 0.1348 0.0139 0.4138 9.8 6npl-a1-m1-cA_6npl-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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