Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=53)
EFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3dm1-a5-m1-cG 53 53 1.0000 1.0000 1.0000 6.32e-34 3dm1-a5-m1-cA_3dm1-a5-m1-cG, 3dm1-a5-m1-cC_3dm1-a5-m1-cG, 3dm1-a5-m1-cE_3dm1-a5-m1-cG
2 3dm1-a5-m1-cE 53 53 1.0000 1.0000 1.0000 6.32e-34 3dm1-a5-m1-cC_3dm1-a5-m1-cE, 3dm1-a5-m1-cE_3dm1-a5-m1-cG
3 3dm1-a5-m1-cC 52 52 0.9811 1.0000 1.0000 2.94e-33 3dm1-a5-m1-cC_3dm1-a5-m1-cE, 3dm1-a5-m1-cC_3dm1-a5-m1-cG
4 3dm1-a5-m1-cA 52 52 0.9811 1.0000 1.0000 2.94e-33 3dm1-a5-m1-cA_3dm1-a5-m1-cG
5 3f2u-a1-m2-cA 51 50 0.7736 0.8039 0.8200 1.60e-25 3f2u-a1-m1-cA_3f2u-a1-m2-cA
6 3f2u-a1-m1-cA 51 50 0.7736 0.8039 0.8200 1.60e-25 3f2u-a1-m1-cA_3f2u-a1-m2-cA
7 3h91-a3-m2-cB 52 47 0.4151 0.4231 0.4681 2.38e-12 3h91-a3-m1-cB_3h91-a3-m2-cB
8 3h91-a3-m1-cB 52 47 0.4151 0.4231 0.4681 2.38e-12 3h91-a3-m1-cB_3h91-a3-m2-cB
9 4quf-a2-m1-cD 58 49 0.4528 0.4138 0.4898 6.72e-12 4quf-a2-m1-cD_4quf-a2-m1-cC
10 4quf-a2-m1-cC 61 49 0.4528 0.3934 0.4898 6.74e-12 4quf-a2-m1-cD_4quf-a2-m1-cC
11 4x3t-a2-m1-cF 56 47 0.4340 0.4107 0.4894 9.73e-12 4x3t-a2-m1-cF_4x3t-a2-m1-cC
12 5ejw-a2-m2-cA 80 47 0.4340 0.2875 0.4894 1.07e-11 5ejw-a2-m1-cA_5ejw-a2-m2-cA
13 5ejw-a2-m1-cA 80 47 0.4340 0.2875 0.4894 1.07e-11 5ejw-a2-m1-cA_5ejw-a2-m2-cA
14 4x3t-a3-m1-cD 62 47 0.4340 0.3710 0.4894 1.23e-11 4x3t-a3-m1-cE_4x3t-a3-m1-cD
15 4x3t-a2-m1-cC 62 47 0.4340 0.3710 0.4894 1.23e-11 4x3t-a2-m1-cF_4x3t-a2-m1-cC
16 3lwe-a4-m1-cA 61 48 0.4717 0.4098 0.5208 6.17e-11 3lwe-a4-m1-cB_3lwe-a4-m1-cA
17 3lwe-a3-m1-cA 61 48 0.4717 0.4098 0.5208 6.17e-11 3lwe-a3-m2-cB_3lwe-a3-m1-cA
18 3lwe-a4-m1-cB 59 48 0.4717 0.4237 0.5208 6.58e-11 3lwe-a4-m1-cB_3lwe-a4-m1-cA
19 3lwe-a3-m2-cB 59 48 0.4717 0.4237 0.5208 6.58e-11 3lwe-a3-m2-cB_3lwe-a3-m1-cA
20 4x3t-a3-m1-cE 51 44 0.4151 0.4314 0.5000 8.62e-11 4x3t-a3-m1-cE_4x3t-a3-m1-cD
21 1pfb-a2-m2-cA 55 52 0.4151 0.4000 0.4231 1.51e-09 1pfb-a2-m1-cA_1pfb-a2-m2-cA
22 1pfb-a2-m1-cA 55 52 0.4151 0.4000 0.4231 1.51e-09 1pfb-a2-m1-cA_1pfb-a2-m2-cA
23 7slw-a2-m1-cE 56 49 0.3962 0.3750 0.4286 9.02e-09 7slw-a2-m1-cE_7slw-a2-m1-cF
24 7slw-a2-m1-cF 57 49 0.3962 0.3684 0.4286 9.22e-09 7slw-a2-m1-cE_7slw-a2-m1-cF
25 7vrf-a1-m1-cB 60 49 0.3962 0.3500 0.4286 1.11e-08 7vrf-a1-m1-cB_7vrf-a1-m1-cA
26 7vrf-a1-m1-cA 61 49 0.3962 0.3443 0.4286 1.24e-08 7vrf-a1-m1-cB_7vrf-a1-m1-cA
27 5jjz-a2-m2-cA 59 47 0.3774 0.3390 0.4255 5.21e-08 5jjz-a2-m1-cA_5jjz-a2-m2-cA
28 5jjz-a2-m1-cA 59 47 0.3774 0.3390 0.4255 5.21e-08 5jjz-a2-m1-cA_5jjz-a2-m2-cA
29 5e4x-a1-m8-cA 50 41 0.3585 0.3800 0.4634 7.47e-05 5e4x-a1-m2-cA_5e4x-a1-m8-cA
30 5e4x-a1-m2-cA 50 41 0.3585 0.3800 0.4634 7.47e-05 5e4x-a1-m2-cA_5e4x-a1-m8-cA
31 2b2w-a1-m1-cC 86 25 0.2453 0.1512 0.5200 2.16e-04 2b2w-a1-m1-cC_2b2w-a1-m1-cA
32 4ft2-a1-m1-cB 670 58 0.4340 0.0343 0.3966 2.52e-04 4ft2-a1-m1-cB_4ft2-a1-m1-cA
33 3kup-a1-m1-cA 59 44 0.2453 0.2203 0.2955 5.43e-04 3kup-a1-m1-cA_3kup-a1-m1-cB
34 3kup-a1-m1-cB 62 44 0.2453 0.2097 0.2955 6.01e-04 3kup-a1-m1-cA_3kup-a1-m1-cB
35 2b2w-a1-m1-cB 175 25 0.2453 0.0743 0.5200 7.38e-04 2b2w-a1-m1-cB_2b2w-a1-m1-cA
36 2b2w-a1-m1-cA 177 25 0.2453 0.0734 0.5200 7.73e-04 2b2w-a1-m1-cB_2b2w-a1-m1-cA, 2b2w-a1-m1-cC_2b2w-a1-m1-cA
37 4ft2-a1-m1-cA 674 34 0.2830 0.0223 0.4412 0.003 4ft2-a1-m1-cB_4ft2-a1-m1-cA
38 2fmm-a1-m2-cD 66 44 0.2264 0.1818 0.2727 0.009 2fmm-a1-m2-cD_2fmm-a1-m2-cA, 2fmm-a1-m2-cD_2fmm-a1-m2-cC
39 2fmm-a1-m2-cC 67 44 0.2264 0.1791 0.2727 0.009 2fmm-a1-m2-cC_2fmm-a1-m2-cA, 2fmm-a1-m2-cD_2fmm-a1-m2-cC
40 2fmm-a1-m2-cA 68 44 0.2264 0.1765 0.2727 0.010 2fmm-a1-m2-cC_2fmm-a1-m2-cA, 2fmm-a1-m2-cD_2fmm-a1-m2-cA
41 4ov4-a1-m2-cA 379 44 0.2642 0.0369 0.3182 2.6 4ov4-a1-m1-cA_4ov4-a1-m2-cA
42 4ov4-a1-m1-cA 379 44 0.2642 0.0369 0.3182 2.6 4ov4-a1-m1-cA_4ov4-a1-m2-cA
43 3p7j-a2-m2-cA 59 45 0.2075 0.1864 0.2444 3.0 3p7j-a2-m2-cA_3p7j-a2-m1-cB
44 3p7j-a1-m1-cA 59 45 0.2075 0.1864 0.2444 3.0 3p7j-a1-m1-cA_3p7j-a1-m1-cB
45 3p7j-a2-m1-cB 61 45 0.2075 0.1803 0.2444 4.5 3p7j-a2-m2-cA_3p7j-a2-m1-cB
46 3p7j-a1-m1-cB 61 45 0.2075 0.1803 0.2444 4.5 3p7j-a1-m1-cA_3p7j-a1-m1-cB
47 1k9t-a1-m2-cA 538 33 0.2264 0.0223 0.3636 5.0 1k9t-a1-m1-cA_1k9t-a1-m2-cA
48 1k9t-a1-m1-cA 538 33 0.2264 0.0223 0.3636 5.0 1k9t-a1-m1-cA_1k9t-a1-m2-cA
49 6pu9-a1-m1-cC 199 43 0.2264 0.0603 0.2791 6.7 6pu9-a1-m1-cC_6pu9-a1-m1-cB

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600