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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=12)
EKNALLRYLLDK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4wg0-a1-m1-cM 13 12 1.0000 0.9231 1.0000 0.089 4wg0-a1-m1-cL_4wg0-a1-m1-cM
2 4wg0-a1-m1-cL 13 12 1.0000 0.9231 1.0000 0.089 4wg0-a1-m1-cL_4wg0-a1-m1-cM
3 4wg0-a1-m1-cI 13 12 1.0000 0.9231 1.0000 0.089 4wg0-a1-m1-cH_4wg0-a1-m1-cI
4 4wg0-a1-m1-cH 12 12 1.0000 1.0000 1.0000 0.090 4wg0-a1-m1-cH_4wg0-a1-m1-cI
5 1xls-a5-m3-cP 18 12 0.8333 0.5556 0.8333 1.4 1xls-a5-m1-cM_1xls-a5-m3-cP
6 1xls-a5-m1-cM 18 12 0.8333 0.5556 0.8333 1.4 1xls-a5-m1-cM_1xls-a5-m3-cP
7 1yok-a1-m1-cC 14 12 0.8333 0.7143 0.8333 1.6 1yok-a1-m1-cB_1yok-a1-m1-cC
8 4dos-a1-m1-cC 11 11 0.8333 0.9091 0.9091 1.7 4dos-a1-m1-cB_4dos-a1-m1-cC
9 4dos-a1-m1-cB 10 10 0.8333 1.0000 1.0000 2.3 4dos-a1-m1-cB_4dos-a1-m1-cC
10 1yok-a1-m1-cB 11 10 0.8333 0.9091 1.0000 2.4 1yok-a1-m1-cB_1yok-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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