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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=77)
ELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAY
EEEIKHLKLGLEQRDHQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3vp9-a1-m2-cB 77 77 1.0000 1.0000 1.0000 3.31e-51 3vp9-a1-m2-cA_3vp9-a1-m2-cB
2 3vp9-a1-m2-cA 70 70 0.9091 1.0000 1.0000 4.24e-46 3vp9-a1-m1-cA_3vp9-a1-m2-cA, 3vp9-a1-m2-cA_3vp9-a1-m2-cB
3 3vp9-a1-m1-cA 70 70 0.9091 1.0000 1.0000 4.24e-46 3vp9-a1-m1-cA_3vp9-a1-m2-cA
4 3vp8-a1-m1-cB 80 68 0.8701 0.8375 0.9853 2.19e-43 3vp8-a1-m1-cD_3vp8-a1-m1-cB
5 3vp8-a1-m1-cC 77 67 0.8571 0.8571 0.9851 1.10e-42 3vp8-a1-m1-cC_3vp8-a1-m1-cD
6 3vp8-a1-m1-cD 78 66 0.8442 0.8333 0.9848 4.73e-42 3vp8-a1-m1-cA_3vp8-a1-m1-cD, 3vp8-a1-m1-cC_3vp8-a1-m1-cD, 3vp8-a1-m1-cD_3vp8-a1-m1-cB
7 3vp8-a1-m1-cA 75 65 0.8312 0.8533 0.9846 6.68e-41 3vp8-a1-m1-cA_3vp8-a1-m1-cD
8 6nmx-a2-m1-cD 348 21 0.1299 0.0287 0.4762 9.4 6nmx-a2-m1-cD_6nmx-a2-m1-cB
9 6nmx-a2-m1-cB 349 21 0.1299 0.0287 0.4762 9.4 6nmx-a2-m1-cD_6nmx-a2-m1-cB
10 2aeu-a1-m2-cA 366 75 0.2468 0.0519 0.2533 9.8 2aeu-a1-m1-cA_2aeu-a1-m2-cA
11 2aeu-a1-m1-cA 366 75 0.2468 0.0519 0.2533 9.8 2aeu-a1-m1-cA_2aeu-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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