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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN
ASLARLDLERKVESLQEEIAFLKK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5whf-a1-m2-cG 88 84 1.0000 0.9545 1.0000 3.99e-52 5whf-a1-m2-cD_5whf-a1-m2-cG, 5whf-a1-m2-cH_5whf-a1-m2-cG
2 5whf-a1-m2-cH 84 84 1.0000 1.0000 1.0000 4.60e-52 5whf-a1-m2-cH_5whf-a1-m2-cE, 5whf-a1-m2-cH_5whf-a1-m2-cG
3 5whf-a1-m2-cE 86 84 1.0000 0.9767 1.0000 4.63e-52 5whf-a1-m2-cH_5whf-a1-m2-cE
4 5whf-a1-m2-cD 85 84 1.0000 0.9882 1.0000 4.85e-52 5whf-a1-m2-cD_5whf-a1-m2-cG
5 4ypc-a1-m3-cA 83 76 0.9048 0.9157 1.0000 8.87e-47 4ypc-a1-m2-cA_4ypc-a1-m3-cA
6 4ypc-a1-m2-cA 83 76 0.9048 0.9157 1.0000 8.87e-47 4ypc-a1-m2-cA_4ypc-a1-m3-cA
7 3uf1-a2-m1-cD 108 84 0.9643 0.7500 0.9643 1.11e-45 3uf1-a2-m1-cC_3uf1-a2-m1-cD
8 3uf1-a2-m1-cC 105 84 0.9643 0.7714 0.9643 1.34e-45 3uf1-a2-m1-cC_3uf1-a2-m1-cD
9 4yv3-a1-m1-cA 75 75 0.8690 0.9733 0.9733 1.70e-40 4yv3-a1-m1-cC_4yv3-a1-m1-cA
10 4yv3-a1-m1-cC 61 61 0.7024 0.9672 0.9672 2.41e-30 4yv3-a1-m1-cC_4yv3-a1-m1-cA
11 6a9p-a1-m1-cH 101 84 0.6310 0.5248 0.6310 8.55e-29 6a9p-a1-m1-cH_6a9p-a1-m1-cA
12 6a9p-a2-m1-cF 100 84 0.6310 0.5300 0.6310 9.90e-29 6a9p-a2-m1-cF_6a9p-a2-m1-cE
13 6a9p-a2-m1-cC 104 84 0.6310 0.5096 0.6310 1.11e-28 6a9p-a2-m1-cE_6a9p-a2-m1-cC
14 6a9p-a2-m1-cE 102 84 0.6310 0.5196 0.6310 1.28e-28 6a9p-a2-m1-cE_6a9p-a2-m1-cC, 6a9p-a2-m1-cF_6a9p-a2-m1-cE
15 6a9p-a1-m1-cA 103 84 0.6310 0.5146 0.6310 1.30e-28 6a9p-a1-m1-cH_6a9p-a1-m1-cA
16 3s4r-a1-m1-cA 88 37 0.4405 0.4205 1.0000 3.65e-18 3s4r-a1-m1-cA_3s4r-a1-m1-cB
17 3s4r-a1-m1-cB 91 37 0.4405 0.4066 1.0000 3.90e-18 3s4r-a1-m1-cA_3s4r-a1-m1-cB
18 6e2j-a2-m4-cA 107 81 0.3690 0.2897 0.3827 1.76e-13 6e2j-a2-m1-cA_6e2j-a2-m4-cA, 6e2j-a2-m2-cA_6e2j-a2-m4-cA, 6e2j-a2-m3-cA_6e2j-a2-m4-cA
19 6e2j-a2-m3-cA 107 81 0.3690 0.2897 0.3827 1.76e-13 6e2j-a2-m3-cA_6e2j-a2-m4-cA
20 6e2j-a2-m2-cA 107 81 0.3690 0.2897 0.3827 1.76e-13 6e2j-a2-m2-cA_6e2j-a2-m4-cA
21 6e2j-a2-m1-cA 107 81 0.3690 0.2897 0.3827 1.76e-13 6e2j-a2-m1-cA_6e2j-a2-m4-cA
22 6e2j-a2-m4-cB 104 83 0.3810 0.3077 0.3855 5.00e-09 6e2j-a2-m2-cB_6e2j-a2-m4-cB
23 6e2j-a2-m4-cB 104 41 0.1786 0.1442 0.3659 0.82 6e2j-a2-m2-cB_6e2j-a2-m4-cB
24 6e2j-a2-m2-cB 104 83 0.3810 0.3077 0.3855 5.00e-09 6e2j-a2-m2-cB_6e2j-a2-m4-cB
25 6e2j-a2-m2-cB 104 41 0.1786 0.1442 0.3659 0.82 6e2j-a2-m2-cB_6e2j-a2-m4-cB
26 1n9w-a1-m1-cA 356 59 0.2738 0.0646 0.3898 1.6 1n9w-a1-m1-cA_1n9w-a1-m1-cB
27 1n9w-a1-m1-cB 359 59 0.2738 0.0641 0.3898 1.7 1n9w-a1-m1-cA_1n9w-a1-m1-cB
28 4qqw-a5-m1-cA 911 48 0.1905 0.0176 0.3333 1.8 4qqw-a5-m1-cC_4qqw-a5-m1-cA
29 4qqw-a5-m1-cC 902 48 0.1905 0.0177 0.3333 1.9 4qqw-a5-m1-cC_4qqw-a5-m1-cA
30 2d8d-a1-m1-cA 80 75 0.2738 0.2875 0.3067 3.1 2d8d-a1-m1-cA_2d8d-a1-m1-cB
31 2d8d-a1-m1-cB 83 75 0.2738 0.2771 0.3067 3.7 2d8d-a1-m1-cA_2d8d-a1-m1-cB
32 4ihs-a3-m1-cA 89 29 0.1190 0.1124 0.3448 3.7 4ihs-a3-m1-cA_4ihs-a3-m1-cC
33 4ihs-a3-m1-cC 90 29 0.1190 0.1111 0.3448 3.8 4ihs-a3-m1-cA_4ihs-a3-m1-cC
34 6mi3-a1-m1-cB 124 44 0.2381 0.1613 0.4545 4.6 6mi3-a1-m1-cA_6mi3-a1-m1-cB
35 6mi3-a1-m1-cA 122 44 0.2381 0.1639 0.4545 5.0 6mi3-a1-m1-cA_6mi3-a1-m1-cB
36 4kvs-a2-m2-cA 221 27 0.1071 0.0407 0.3333 5.9 4kvs-a2-m1-cA_4kvs-a2-m2-cA
37 4kvs-a2-m1-cA 221 27 0.1071 0.0407 0.3333 5.9 4kvs-a2-m1-cA_4kvs-a2-m2-cA
38 3k1m-a4-m1-cA 300 29 0.1190 0.0333 0.3448 7.2 3k1m-a4-m1-cA_3k1m-a4-m3-cB
39 3k1m-a2-m2-cA 300 29 0.1190 0.0333 0.3448 7.2 3k1m-a2-m1-cA_3k1m-a2-m2-cA
40 3k1m-a2-m1-cA 300 29 0.1190 0.0333 0.3448 7.2 3k1m-a2-m1-cA_3k1m-a2-m2-cA, 3k1m-a2-m1-cA_3k1m-a2-m4-cB
41 3k1m-a1-m1-cA 300 29 0.1190 0.0333 0.3448 7.2 3k1m-a1-m1-cA_3k1m-a1-m1-cB
42 7eyw-a2-m3-cD 252 58 0.1667 0.0556 0.2414 8.3 7eyw-a2-m3-cD_7eyw-a2-m1-cA

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Reference:
Jacob Schwartz et al.

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