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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
EQKEIETLVELFAEAFREAKRQKKNGTPEEWARDAVEEAARQQGRSRKDVVEALTKYAQE
QGRDELLKRLGITPEIYKVIQQIRKEEG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7dns-a1-m1-cB 88 88 1.0000 1.0000 1.0000 1.18e-57 7dns-a1-m1-cB_7dns-a1-m1-cA
2 7dns-a1-m1-cA 90 88 1.0000 0.9778 1.0000 1.88e-57 7dns-a1-m1-cB_7dns-a1-m1-cA
3 8bmw-a1-m1-cD 121 52 0.1591 0.1157 0.2692 2.1 8bmw-a1-m1-cD_8bmw-a1-m1-cE
4 8bmw-a1-m1-cE 122 52 0.1591 0.1148 0.2692 2.2 8bmw-a1-m1-cD_8bmw-a1-m1-cE
5 5txv-a3-m1-cR 338 50 0.1818 0.0473 0.3200 4.2 5txv-a3-m1-cR_5txv-a3-m1-cQ
6 3bb9-a3-m1-cE 120 22 0.1250 0.0917 0.5000 5.2 3bb9-a3-m1-cF_3bb9-a3-m1-cE
7 3bb9-a3-m1-cF 115 22 0.1250 0.0957 0.5000 5.4 3bb9-a3-m1-cF_3bb9-a3-m1-cE
8 3ktc-a1-m2-cB 325 15 0.1136 0.0308 0.6667 8.9 3ktc-a1-m1-cA_3ktc-a1-m2-cB, 3ktc-a1-m1-cB_3ktc-a1-m2-cB, 3ktc-a1-m2-cA_3ktc-a1-m2-cB
9 3ktc-a1-m2-cA 325 15 0.1136 0.0308 0.6667 8.9 3ktc-a1-m2-cA_3ktc-a1-m2-cB
10 3ktc-a1-m1-cB 325 15 0.1136 0.0308 0.6667 8.9 3ktc-a1-m1-cB_3ktc-a1-m2-cB
11 3ktc-a1-m1-cA 325 15 0.1136 0.0308 0.6667 8.9 3ktc-a1-m1-cA_3ktc-a1-m2-cB

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Reference:
Jacob Schwartz et al.

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