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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=53)
EQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3vir-a1-m1-cD 63 53 1.0000 0.8413 1.0000 1.02e-32 3vir-a1-m1-cC_3vir-a1-m1-cD
2 3vir-a1-m1-cC 53 53 1.0000 1.0000 1.0000 1.03e-32 3vir-a1-m1-cC_3vir-a1-m1-cA, 3vir-a1-m1-cC_3vir-a1-m1-cB, 3vir-a1-m1-cC_3vir-a1-m1-cD
3 3vir-a1-m1-cB 66 53 1.0000 0.8030 1.0000 1.15e-32 3vir-a1-m1-cC_3vir-a1-m1-cB
4 3vir-a1-m1-cA 69 53 1.0000 0.7681 1.0000 1.25e-32 3vir-a1-m1-cC_3vir-a1-m1-cA
5 4mz0-a1-m1-cA 896 30 0.2830 0.0167 0.5000 0.64 4mz0-a1-m1-cB_4mz0-a1-m1-cA
6 4yp9-a1-m1-cB 342 31 0.2264 0.0351 0.3871 2.4 4yp9-a1-m1-cA_4yp9-a1-m1-cB
7 5h7w-a1-m1-cA 528 32 0.2642 0.0265 0.4375 4.0 5h7w-a1-m1-cA_5h7w-a1-m1-cB
8 5h7w-a1-m1-cB 529 32 0.2642 0.0265 0.4375 4.0 5h7w-a1-m1-cA_5h7w-a1-m1-cB
9 7d65-a1-m1-cK 288 24 0.1887 0.0347 0.4167 5.0 7d65-a1-m1-cJ_7d65-a1-m1-cK
10 7d65-a1-m1-cJ 288 24 0.1887 0.0347 0.4167 5.0 7d65-a1-m1-cJ_7d65-a1-m1-cK
11 4yp9-a1-m1-cA 337 49 0.3019 0.0475 0.3265 6.2 4yp9-a1-m1-cA_4yp9-a1-m1-cB
12 6mab-a2-m4-cA 269 49 0.3019 0.0595 0.3265 6.4 6mab-a2-m2-cA_6mab-a2-m4-cA
13 6mab-a2-m2-cA 269 49 0.3019 0.0595 0.3265 6.4 6mab-a2-m2-cA_6mab-a2-m4-cA
14 4fqn-a1-m1-cB 93 27 0.1887 0.1075 0.3704 8.6 4fqn-a1-m1-cB_4fqn-a1-m1-cA
15 4fqn-a1-m1-cA 95 27 0.1887 0.1053 0.3704 9.6 4fqn-a1-m1-cB_4fqn-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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