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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
ESFYGVTLTAESDSVTWDVGQKLVIKQILLGAEAKENEFNVVEVNTPKDSVQIPIAVLKA
GETRAVNPDVEFYESKVTFKLIKGSGPVYIHGHNIK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1nlq-a1-m1-cC 96 96 1.0000 1.0000 1.0000 1.50e-66 1nlq-a1-m1-cC_1nlq-a1-m1-cE
2 1nlq-a1-m1-cE 98 98 1.0000 0.9796 0.9796 1.33e-64 1nlq-a1-m1-cC_1nlq-a1-m1-cE
3 3t30-a2-m1-cH 93 96 0.3333 0.3441 0.3333 4.30e-07 3t30-a2-m1-cI_3t30-a2-m1-cH
4 1k5j-a1-m1-cD 90 76 0.3021 0.3222 0.3816 9.34e-07 1k5j-a1-m1-cC_1k5j-a1-m1-cD
5 3t30-a2-m1-cI 92 96 0.3333 0.3478 0.3333 1.36e-06 3t30-a2-m1-cI_3t30-a2-m1-cH
6 1k5j-a1-m1-cC 89 76 0.2917 0.3146 0.3684 6.50e-06 1k5j-a1-m1-cC_1k5j-a1-m1-cD
7 1xe0-a2-m1-cJ 104 103 0.3229 0.2981 0.3010 2.30e-05 1xe0-a2-m1-cJ_1xe0-a2-m1-cI
8 1xe0-a2-m1-cI 105 104 0.3229 0.2952 0.2981 4.70e-05 1xe0-a2-m1-cJ_1xe0-a2-m1-cI
9 8as5-a1-m1-cE 97 100 0.2708 0.2680 0.2600 0.99 8as5-a1-m1-cA_8as5-a1-m1-cE
10 4lns-a1-m2-cA 304 70 0.1979 0.0625 0.2714 1.6 4lns-a1-m1-cA_4lns-a1-m2-cA
11 4lns-a1-m1-cA 304 70 0.1979 0.0625 0.2714 1.6 4lns-a1-m1-cA_4lns-a1-m2-cA
12 2o1s-a2-m1-cD 469 55 0.1667 0.0341 0.2909 1.8 2o1s-a2-m1-cD_2o1s-a2-m1-cC
13 1ddz-a1-m1-cB 481 54 0.1667 0.0333 0.2963 2.5 1ddz-a1-m1-cA_1ddz-a1-m1-cB
14 1ddz-a1-m1-cA 481 54 0.1667 0.0333 0.2963 2.5 1ddz-a1-m1-cA_1ddz-a1-m1-cB
15 1vkh-a2-m1-cA 253 32 0.1146 0.0435 0.3438 3.1 1vkh-a2-m2-cB_1vkh-a2-m1-cA
16 1vkh-a1-m1-cA 253 32 0.1146 0.0435 0.3438 3.1 1vkh-a1-m1-cB_1vkh-a1-m1-cA
17 3tsb-a2-m4-cB 434 48 0.1354 0.0300 0.2708 4.4 3tsb-a2-m2-cB_3tsb-a2-m4-cB
18 3tsb-a2-m2-cB 434 48 0.1354 0.0300 0.2708 4.4 3tsb-a2-m2-cB_3tsb-a2-m4-cB
19 3tsb-a1-m4-cA 490 48 0.1354 0.0265 0.2708 4.6 3tsb-a1-m2-cA_3tsb-a1-m4-cA
20 3tsb-a1-m2-cA 490 48 0.1354 0.0265 0.2708 4.6 3tsb-a1-m2-cA_3tsb-a1-m4-cA
21 2vx2-a3-m1-cI 254 57 0.1771 0.0669 0.2982 5.2 2vx2-a3-m1-cG_2vx2-a3-m1-cI
22 2vx2-a3-m1-cG 253 57 0.1771 0.0672 0.2982 5.2 2vx2-a3-m1-cG_2vx2-a3-m1-cI
23 2o1s-a2-m1-cC 518 72 0.1875 0.0347 0.2500 7.7 2o1s-a2-m1-cD_2o1s-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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