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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=60)
FARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5low-a1-m1-cG 60 60 1.0000 1.0000 1.0000 3.80e-38 5low-a1-m1-cE_5low-a1-m1-cG
2 5low-a1-m1-cE 56 56 0.9333 1.0000 1.0000 1.09e-34 5low-a1-m1-cE_5low-a1-m1-cG
3 4wbx-a1-m4-cC 298 24 0.2000 0.0403 0.5000 1.8 4wbx-a1-m1-cC_4wbx-a1-m4-cC, 4wbx-a1-m3-cC_4wbx-a1-m4-cC
4 4wbx-a1-m3-cC 298 24 0.2000 0.0403 0.5000 1.8 4wbx-a1-m3-cC_4wbx-a1-m4-cC
5 4wbx-a1-m1-cC 298 24 0.2000 0.0403 0.5000 1.8 4wbx-a1-m1-cC_4wbx-a1-m4-cC
6 3unv-a2-m2-cB 513 27 0.1667 0.0195 0.3704 2.8 3unv-a2-m1-cB_3unv-a2-m2-cB
7 3unv-a2-m1-cB 513 27 0.1667 0.0195 0.3704 2.8 3unv-a2-m1-cB_3unv-a2-m2-cB

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Reference:
Jacob Schwartz et al.

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