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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
FEQLQAAIHTDLGALEKSVSALEKSLTSLSEVVLQNRRGLDLLFLKEGGLCAALKEECSF
YADHTGVVRDSMAKLRERLN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4jgs-a2-m1-cB 82 80 1.0000 0.9756 1.0000 2.41e-53 4jgs-a2-m1-cF_4jgs-a2-m1-cB
2 4jgs-a2-m1-cF 80 80 1.0000 1.0000 1.0000 3.41e-53 4jgs-a2-m1-cF_4jgs-a2-m1-cB
3 7s94-a2-m1-cE 76 76 0.7625 0.8026 0.8026 1.63e-38 7s94-a2-m1-cE_7s94-a2-m1-cF
4 7s94-a2-m1-cF 83 77 0.7625 0.7349 0.7922 1.73e-38 7s94-a2-m1-cE_7s94-a2-m1-cF
5 1mof-a1-m3-cA 53 53 0.5875 0.8868 0.8868 1.88e-27 1mof-a1-m2-cA_1mof-a1-m3-cA
6 1mof-a1-m2-cA 53 53 0.5875 0.8868 0.8868 1.88e-27 1mof-a1-m2-cA_1mof-a1-m3-cA
7 4jf3-a2-m5-cB 92 79 0.4500 0.3913 0.4557 6.31e-22 4jf3-a2-m4-cB_4jf3-a2-m5-cB
8 4jf3-a2-m4-cB 92 79 0.4500 0.3913 0.4557 6.31e-22 4jf3-a2-m4-cB_4jf3-a2-m5-cB
9 5ha6-a1-m4-cA 93 79 0.3875 0.3333 0.3924 2.47e-16 5ha6-a1-m2-cA_5ha6-a1-m4-cA
10 5ha6-a1-m2-cA 93 79 0.3875 0.3333 0.3924 2.47e-16 5ha6-a1-m2-cA_5ha6-a1-m4-cA
11 5ha6-a2-m5-cB 79 79 0.3000 0.3038 0.3038 1.19e-07 5ha6-a2-m3-cB_5ha6-a2-m5-cB
12 5ha6-a2-m3-cB 79 79 0.3000 0.3038 0.3038 1.19e-07 5ha6-a2-m3-cB_5ha6-a2-m5-cB
13 5h9c-a1-m3-cA 78 56 0.2250 0.2308 0.3214 0.001 5h9c-a1-m2-cA_5h9c-a1-m3-cA
14 5h9c-a1-m2-cA 78 56 0.2250 0.2308 0.3214 0.001 5h9c-a1-m2-cA_5h9c-a1-m3-cA
15 3s88-a5-m9-cJ 106 35 0.1375 0.1038 0.3143 0.24 3s88-a5-m5-cJ_3s88-a5-m9-cJ
16 3s88-a5-m5-cJ 106 35 0.1375 0.1038 0.3143 0.24 3s88-a5-m5-cJ_3s88-a5-m9-cJ
17 4g2k-a1-m1-cB 108 44 0.1875 0.1389 0.3409 0.29 4g2k-a1-m1-cC_4g2k-a1-m1-cB
18 4g2k-a1-m1-cC 107 44 0.1875 0.1402 0.3409 0.29 4g2k-a1-m1-cC_4g2k-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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