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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
FETPFTVVGNIITNPVRLRFGDQELYKFRVASNSRRRNSLYVTVNCWGNLARGVSASLGK
GDSVVVVGHLYTNEYSSVEVRATAVGPDLSRCIARVEK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5gqo-a1-m2-cB 98 98 1.0000 1.0000 1.0000 2.45e-68 5gqo-a1-m1-cB_5gqo-a1-m2-cB
2 5gqo-a1-m1-cB 98 98 1.0000 1.0000 1.0000 2.45e-68 5gqo-a1-m1-cB_5gqo-a1-m2-cB
3 3eiv-a3-m1-cD 100 100 0.4082 0.4000 0.4000 2.96e-11 3eiv-a3-m1-cD_3eiv-a3-m1-cC
4 3eiv-a1-m1-cD 100 100 0.4082 0.4000 0.4000 2.96e-11 3eiv-a1-m1-cA_3eiv-a1-m1-cD
5 3eiv-a2-m1-cA 98 99 0.3776 0.3776 0.3737 6.83e-10 3eiv-a2-m1-cA_3eiv-a2-m1-cB
6 3eiv-a1-m1-cA 98 99 0.3776 0.3776 0.3737 6.83e-10 3eiv-a1-m1-cA_3eiv-a1-m1-cD
7 3eiv-a2-m1-cB 111 108 0.3980 0.3514 0.3611 2.47e-09 3eiv-a2-m1-cA_3eiv-a2-m1-cB
8 3eiv-a3-m1-cC 111 109 0.3878 0.3423 0.3486 2.78e-09 3eiv-a3-m1-cD_3eiv-a3-m1-cC
9 1x3e-a1-m2-cA 110 109 0.3673 0.3273 0.3303 7.78e-09 1x3e-a1-m1-cA_1x3e-a1-m2-cA, 1x3e-a1-m2-cA_1x3e-a1-m2-cB
10 1x3e-a1-m1-cA 110 109 0.3673 0.3273 0.3303 7.78e-09 1x3e-a1-m1-cA_1x3e-a1-m2-cA
11 7f5y-a1-m2-cA 109 105 0.3469 0.3119 0.3238 8.22e-09 7f5y-a1-m2-cA_7f5y-a1-m2-cB
12 3a5u-a1-m2-cB 112 110 0.3673 0.3214 0.3273 2.89e-08 3a5u-a1-m2-cB_3a5u-a1-m2-cA
13 1ue7-a2-m3-cD 95 97 0.3367 0.3474 0.3402 4.08e-08 1ue7-a2-m1-cD_1ue7-a2-m3-cD
14 1ue7-a2-m1-cD 95 97 0.3367 0.3474 0.3402 4.08e-08 1ue7-a2-m1-cD_1ue7-a2-m3-cD
15 4dam-a3-m1-cL 100 97 0.3265 0.3200 0.3299 5.26e-08 4dam-a3-m1-cL_4dam-a3-m1-cI
16 1ue7-a1-m2-cA 106 103 0.3469 0.3208 0.3301 5.86e-08 1ue7-a1-m2-cB_1ue7-a1-m2-cA
17 1ue7-a1-m1-cA 106 103 0.3469 0.3208 0.3301 5.86e-08 1ue7-a1-m2-cB_1ue7-a1-m1-cA
18 1ue7-a1-m2-cB 98 99 0.3367 0.3367 0.3333 7.75e-08 1ue7-a1-m2-cB_1ue7-a1-m1-cA, 1ue7-a1-m2-cB_1ue7-a1-m2-cA
19 7f5z-a1-m2-cA 117 115 0.3571 0.2991 0.3043 1.20e-07 7f5z-a1-m2-cA_7f5z-a1-m2-cB
20 4dam-a2-m1-cG 98 96 0.3469 0.3469 0.3542 1.85e-07 4dam-a2-m1-cG_4dam-a2-m1-cH
21 3a5u-a1-m2-cA 118 116 0.3673 0.3051 0.3103 2.77e-07 3a5u-a1-m1-cA_3a5u-a1-m2-cA, 3a5u-a1-m2-cB_3a5u-a1-m2-cA
22 3a5u-a1-m1-cA 118 116 0.3673 0.3051 0.3103 2.77e-07 3a5u-a1-m1-cA_3a5u-a1-m2-cA
23 1x3e-a1-m2-cB 119 117 0.3673 0.3025 0.3077 2.79e-07 1x3e-a1-m2-cA_1x3e-a1-m2-cB
24 1ue1-a1-m2-cB 119 114 0.3571 0.2941 0.3070 8.31e-07 1ue1-a1-m1-cB_1ue1-a1-m2-cB
25 1ue1-a1-m1-cB 119 114 0.3571 0.2941 0.3070 8.31e-07 1ue1-a1-m1-cB_1ue1-a1-m2-cB
26 7f5z-a1-m2-cB 118 115 0.3469 0.2881 0.2957 1.12e-06 7f5z-a1-m1-cB_7f5z-a1-m2-cB, 7f5z-a1-m2-cA_7f5z-a1-m2-cB
27 7f5z-a1-m1-cB 118 115 0.3469 0.2881 0.2957 1.12e-06 7f5z-a1-m1-cB_7f5z-a1-m2-cB
28 7f5y-a1-m2-cB 120 117 0.3571 0.2917 0.2991 2.26e-06 7f5y-a1-m2-cA_7f5y-a1-m2-cB
29 4dam-a2-m1-cH 108 105 0.3367 0.3056 0.3143 1.07e-04 4dam-a2-m1-cG_4dam-a2-m1-cH
30 4dam-a2-m1-cE 112 107 0.3367 0.2946 0.3084 1.36e-04 4dam-a2-m1-cF_4dam-a2-m1-cE
31 4dam-a3-m1-cI 110 107 0.3367 0.3000 0.3084 1.37e-04 4dam-a3-m1-cL_4dam-a3-m1-cI
32 4dam-a2-m1-cF 110 107 0.3367 0.3000 0.3084 1.37e-04 4dam-a2-m1-cF_4dam-a2-m1-cE
33 2fxq-a1-m2-cA 197 71 0.2143 0.1066 0.2958 0.005 2fxq-a1-m1-cA_2fxq-a1-m2-cA
34 2fxq-a1-m1-cA 197 71 0.2143 0.1066 0.2958 0.005 2fxq-a1-m1-cA_2fxq-a1-m2-cA
35 2ihf-a1-m2-cA 205 71 0.1939 0.0927 0.2676 0.018 2ihf-a1-m1-cA_2ihf-a1-m2-cA
36 2ihf-a1-m1-cA 205 71 0.1939 0.0927 0.2676 0.018 2ihf-a1-m1-cA_2ihf-a1-m2-cA
37 5odn-a1-m1-cC 102 88 0.2245 0.2157 0.2500 1.4 5odn-a1-m1-cC_5odn-a1-m1-cF
38 7x7q-a1-m1-cO 309 30 0.1327 0.0421 0.4333 3.3 7x7q-a1-m1-cN_7x7q-a1-m1-cO
39 7x7q-a1-m1-cN 309 30 0.1327 0.0421 0.4333 3.3 7x7q-a1-m1-cN_7x7q-a1-m1-cO
40 6f0h-a1-m3-cC 153 33 0.1224 0.0784 0.3636 4.3 6f0h-a1-m3-cA_6f0h-a1-m3-cC
41 6f0h-a1-m3-cA 152 33 0.1224 0.0789 0.3636 4.4 6f0h-a1-m3-cA_6f0h-a1-m3-cC
42 5odn-a1-m1-cG 102 51 0.1633 0.1569 0.3137 9.4 5odn-a1-m1-cG_5odn-a1-m1-cE
43 5odp-a1-m1-cA 99 49 0.1735 0.1717 0.3469 9.8 5odp-a1-m1-cA_5odp-a1-m1-cG

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Reference:
Jacob Schwartz et al.

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