Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=48)
GADDFDFLKNLSLEELQRLKALDPEREIEELRQRYTAKRQPILDADAK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4hkd-a1-m1-cB 48 48 1.0000 1.0000 1.0000 3.32e-28 4hkd-a1-m1-cA_4hkd-a1-m1-cB
2 4hkd-a1-m1-cA 46 46 0.9583 1.0000 1.0000 2.03e-26 4hkd-a1-m1-cA_4hkd-a1-m1-cB
3 2jo8-a1-m1-cB 51 47 0.6042 0.5686 0.6170 1.23e-12 2jo8-a1-m1-cA_2jo8-a1-m1-cB
4 2jo8-a1-m1-cA 51 47 0.6042 0.5686 0.6170 1.23e-12 2jo8-a1-m1-cA_2jo8-a1-m1-cB
5 4nr2-a3-m1-cE 51 45 0.6042 0.5686 0.6444 1.68e-12 4nr2-a3-m1-cF_4nr2-a3-m1-cE
6 4nr2-a3-m1-cF 47 43 0.5833 0.5957 0.6512 4.78e-11 4nr2-a3-m1-cF_4nr2-a3-m1-cE
7 6bn1-a2-m3-cA 54 45 0.5000 0.4444 0.5333 1.75e-07 6bn1-a2-m1-cA_6bn1-a2-m3-cA
8 6bn1-a2-m1-cA 54 45 0.5000 0.4444 0.5333 1.75e-07 6bn1-a2-m1-cA_6bn1-a2-m3-cA
9 7nyw-a1-m1-cB 858 14 0.2292 0.0128 0.7857 1.0 7nyw-a1-m1-cA_7nyw-a1-m1-cB
10 7cwv-a2-m2-cL 495 25 0.2708 0.0263 0.5200 2.0 7cwv-a2-m1-cI_7cwv-a2-m2-cL, 7cwv-a2-m1-cK_7cwv-a2-m2-cL, 7cwv-a2-m2-cB_7cwv-a2-m2-cL
11 7cwv-a2-m1-cK 495 25 0.2708 0.0263 0.5200 2.0 7cwv-a2-m1-cK_7cwv-a2-m2-cL
12 7cwv-a2-m1-cI 495 25 0.2708 0.0263 0.5200 2.0 7cwv-a2-m1-cI_7cwv-a2-m2-cL
13 7cwv-a2-m2-cB 494 25 0.2708 0.0263 0.5200 2.0 7cwv-a2-m2-cB_7cwv-a2-m2-cL
14 5day-a1-m1-cA 172 43 0.3125 0.0872 0.3488 9.5 5day-a1-m1-cA_5day-a1-m1-cB
15 5day-a1-m1-cB 173 43 0.3125 0.0867 0.3488 9.5 5day-a1-m1-cA_5day-a1-m1-cB

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600