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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=50)
GADEAATKLDLARAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4mbq-a2-m1-cC 51 50 1.0000 0.9804 1.0000 1.68e-28 4mbq-a2-m1-cC_4mbq-a2-m1-cD
2 4mbq-a2-m1-cD 51 50 1.0000 0.9804 1.0000 2.05e-28 4mbq-a2-m1-cC_4mbq-a2-m1-cD, 4mbq-a2-m1-cF_4mbq-a2-m1-cD
3 4mbq-a2-m1-cF 50 50 1.0000 1.0000 1.0000 2.07e-28 4mbq-a2-m1-cF_4mbq-a2-m1-cD
4 3ghd-a3-m2-cB 68 22 0.1800 0.1324 0.4091 0.70 3ghd-a3-m1-cB_3ghd-a3-m2-cB
5 3ghd-a3-m1-cB 68 22 0.1800 0.1324 0.4091 0.70 3ghd-a3-m1-cB_3ghd-a3-m2-cB
6 3ghd-a2-m1-cB 68 22 0.1800 0.1324 0.4091 0.70 3ghd-a2-m1-cA_3ghd-a2-m1-cB
7 3ghd-a2-m1-cA 68 22 0.1800 0.1324 0.4091 0.70 3ghd-a2-m1-cA_3ghd-a2-m1-cB
8 3ghd-a1-m2-cB 68 22 0.1800 0.1324 0.4091 0.70 3ghd-a1-m1-cA_3ghd-a1-m2-cB
9 3ghd-a1-m1-cA 68 22 0.1800 0.1324 0.4091 0.70 3ghd-a1-m1-cA_3ghd-a1-m2-cB
10 5e6s-a4-m2-cE 580 34 0.2000 0.0172 0.2941 8.2 5e6s-a4-m3-cC_5e6s-a4-m2-cE
11 5e6s-a4-m1-cA 578 34 0.2000 0.0173 0.2941 8.3 5e6s-a4-m1-cA_5e6s-a4-m3-cC
12 4ixd-a2-m2-cA 182 34 0.2000 0.0549 0.2941 8.5 4ixd-a2-m1-cA_4ixd-a2-m2-cA
13 4ixd-a2-m1-cA 182 34 0.2000 0.0549 0.2941 8.5 4ixd-a2-m1-cA_4ixd-a2-m2-cA
14 5e6s-a4-m3-cC 578 34 0.2000 0.0173 0.2941 8.6 5e6s-a4-m1-cA_5e6s-a4-m3-cC, 5e6s-a4-m3-cC_5e6s-a4-m2-cE
15 1lfa-a1-m1-cB 182 34 0.2000 0.0549 0.2941 9.9 1lfa-a1-m1-cB_1lfa-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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