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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
GADKIAIVNGSLFQQVAQKTGVSNTLERARRSNEERGKLVTRIQTAVKSVANSQDIDLVV
DANAVAYNSSDVKDITADVLKQVK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1u2m-a1-m1-cA 84 84 1.0000 1.0000 1.0000 1.96e-54 1u2m-a1-m1-cA_1u2m-a1-m1-cC
2 1sg2-a1-m1-cB 109 108 0.9881 0.7615 0.7685 2.14e-46 1sg2-a1-m1-cB_1sg2-a1-m1-cC
3 1u2m-a1-m1-cB 114 114 0.9643 0.7105 0.7105 3.25e-45 1u2m-a1-m1-cB_1u2m-a1-m1-cC
4 1u2m-a1-m1-cC 137 137 1.0000 0.6131 0.6131 1.86e-44 1u2m-a1-m1-cA_1u2m-a1-m1-cC, 1u2m-a1-m1-cB_1u2m-a1-m1-cC
5 1sg2-a1-m1-cC 142 58 0.6786 0.4014 0.9828 1.10e-33 1sg2-a1-m1-cA_1sg2-a1-m1-cC, 1sg2-a1-m1-cB_1sg2-a1-m1-cC
6 1sg2-a1-m1-cA 141 58 0.6786 0.4043 0.9828 1.12e-33 1sg2-a1-m1-cA_1sg2-a1-m1-cC
7 3b6u-a1-m1-cB 343 68 0.1905 0.0466 0.2353 0.23 3b6u-a1-m1-cA_3b6u-a1-m1-cB
8 3b6u-a1-m1-cA 323 68 0.1905 0.0495 0.2353 0.24 3b6u-a1-m1-cA_3b6u-a1-m1-cB
9 5ku7-a1-m1-cB 167 45 0.1667 0.0838 0.3111 0.96 5ku7-a1-m1-cB_5ku7-a1-m1-cA
10 5ku7-a1-m1-cA 171 45 0.1667 0.0819 0.3111 1.1 5ku7-a1-m1-cB_5ku7-a1-m1-cA
11 1wde-a2-m2-cA 284 45 0.1786 0.0528 0.3333 1.3 1wde-a2-m1-cA_1wde-a2-m2-cA
12 1wde-a2-m1-cA 284 45 0.1786 0.0528 0.3333 1.3 1wde-a2-m1-cA_1wde-a2-m2-cA
13 3tbf-a4-m1-cH 351 29 0.1310 0.0313 0.3793 1.4 3tbf-a4-m1-cG_3tbf-a4-m1-cH
14 3tbf-a4-m1-cG 351 29 0.1310 0.0313 0.3793 1.4 3tbf-a4-m1-cG_3tbf-a4-m1-cH
15 5ms4-a4-m1-cD 228 27 0.1310 0.0482 0.4074 5.4 5ms4-a4-m1-cH_5ms4-a4-m1-cD
16 2zqq-a1-m1-cB 265 26 0.1190 0.0377 0.3846 9.4 2zqq-a1-m1-cB_2zqq-a1-m1-cE, 2zqq-a1-m1-cF_2zqq-a1-m1-cB
17 1hzd-a1-m1-cF 265 26 0.1190 0.0377 0.3846 9.4 1hzd-a1-m1-cB_1hzd-a1-m1-cF
18 1hzd-a1-m1-cB 265 26 0.1190 0.0377 0.3846 9.4 1hzd-a1-m1-cB_1hzd-a1-m1-cF
19 2zqr-a1-m1-cE 266 26 0.1190 0.0376 0.3846 9.7 2zqr-a1-m1-cA_2zqr-a1-m1-cE
20 2zqr-a1-m1-cA 266 26 0.1190 0.0376 0.3846 9.7 2zqr-a1-m1-cA_2zqr-a1-m1-cE
21 2zqq-a1-m1-cE 266 26 0.1190 0.0376 0.3846 9.7 2zqq-a1-m1-cB_2zqq-a1-m1-cE, 2zqq-a1-m1-cD_2zqq-a1-m1-cE
22 2zqq-a1-m1-cD 266 26 0.1190 0.0376 0.3846 9.7 2zqq-a1-m1-cD_2zqq-a1-m1-cE
23 5mz4-a1-m1-cB 679 35 0.1548 0.0191 0.3714 9.8 5mz4-a1-m1-cB_5mz4-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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