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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=60)
GAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1gmj-a1-m1-cA 65 60 1.0000 0.9231 1.0000 3.98e-35 1gmj-a1-m1-cB_1gmj-a1-m1-cA
2 1gmj-a1-m1-cB 60 60 1.0000 1.0000 1.0000 5.24e-35 1gmj-a1-m1-cB_1gmj-a1-m1-cA
3 1gmj-a2-m1-cC 59 59 0.9833 1.0000 1.0000 2.71e-34 1gmj-a2-m1-cD_1gmj-a2-m1-cC
4 6j5k-a1-m1-cJ 78 59 0.9000 0.6923 0.9153 6.69e-32 6j5k-a1-m1-cCJ_6j5k-a1-m1-cJ
5 1gmj-a2-m1-cD 56 56 0.9333 1.0000 1.0000 1.75e-31 1gmj-a2-m1-cD_1gmj-a2-m1-cC
6 6j5k-a1-m1-cCJ 75 56 0.8500 0.6800 0.9107 4.71e-30 6j5k-a1-m1-cCJ_6j5k-a1-m1-cJ
7 1hf9-a1-m1-cB 41 36 0.5833 0.8537 0.9722 1.57e-16 1hf9-a1-m1-cA_1hf9-a1-m1-cB
8 1hf9-a1-m1-cA 41 36 0.5833 0.8537 0.9722 1.57e-16 1hf9-a1-m1-cA_1hf9-a1-m1-cB
9 7dtl-a1-m1-cB 61 58 0.4000 0.3934 0.4138 1.18e-05 7dtl-a1-m1-cA_7dtl-a1-m1-cB
10 7dtl-a1-m1-cA 61 58 0.4000 0.3934 0.4138 1.18e-05 7dtl-a1-m1-cA_7dtl-a1-m1-cB
11 2iak-a3-m3-cA 198 46 0.2500 0.0758 0.3261 0.40 2iak-a3-m2-cA_2iak-a3-m3-cA
12 2iak-a3-m2-cA 198 46 0.2500 0.0758 0.3261 0.40 2iak-a3-m2-cA_2iak-a3-m3-cA
13 2iak-a2-m6-cA 198 46 0.2500 0.0758 0.3261 0.40 2iak-a2-m2-cA_2iak-a2-m6-cA
14 2iak-a2-m2-cA 198 46 0.2500 0.0758 0.3261 0.40 2iak-a2-m2-cA_2iak-a2-m6-cA
15 1t3j-a1-m2-cA 62 30 0.2167 0.2097 0.4333 2.2 1t3j-a1-m1-cA_1t3j-a1-m2-cA
16 1t3j-a1-m1-cA 62 30 0.2167 0.2097 0.4333 2.2 1t3j-a1-m1-cA_1t3j-a1-m2-cA
17 6mgw-a1-m1-cB 634 40 0.1833 0.0174 0.2750 2.3 6mgw-a1-m1-cA_6mgw-a1-m1-cB
18 6mgw-a1-m1-cA 634 40 0.1833 0.0174 0.2750 2.3 6mgw-a1-m1-cA_6mgw-a1-m1-cB
19 3jbh-a1-m8-cH 964 32 0.2167 0.0135 0.4062 4.5 3jbh-a1-m8-cG_3jbh-a1-m8-cH
20 6ijz-a1-m1-cB 683 24 0.1167 0.0102 0.2917 7.6 6ijz-a1-m1-cA_6ijz-a1-m1-cB
21 6ijz-a1-m1-cA 683 24 0.1167 0.0102 0.2917 7.6 6ijz-a1-m1-cA_6ijz-a1-m1-cB
22 3jbh-a1-m8-cG 962 30 0.2167 0.0135 0.4333 8.3 3jbh-a1-m8-cG_3jbh-a1-m8-cH

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Reference:
Jacob Schwartz et al.

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