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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
GAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFESCGVAYVVQE
PGDYEVSVKFNEEHIPDSPFVVPVASP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2jf1-a1-m3-cA 87 87 1.0000 1.0000 1.0000 2.04e-57 2jf1-a1-m2-cA_2jf1-a1-m3-cA
2 2jf1-a1-m2-cA 87 87 1.0000 1.0000 1.0000 2.04e-57 2jf1-a1-m2-cA_2jf1-a1-m3-cA
3 2w0p-a1-m1-cB 94 92 1.0000 0.9255 0.9457 5.03e-55 2w0p-a1-m1-cA_2w0p-a1-m1-cB
4 2w0p-a1-m1-cA 93 92 1.0000 0.9355 0.9457 6.86e-55 2w0p-a1-m1-cA_2w0p-a1-m1-cB
5 7vzo-a1-m1-cB 191 90 0.6782 0.3089 0.6556 4.62e-37 7vzo-a1-m1-cA_7vzo-a1-m1-cB
6 7vzo-a1-m1-cB 191 32 0.1954 0.0890 0.5312 0.008 7vzo-a1-m1-cA_7vzo-a1-m1-cB
7 7vzo-a1-m1-cA 191 90 0.6782 0.3089 0.6556 4.62e-37 7vzo-a1-m1-cA_7vzo-a1-m1-cB
8 7vzo-a1-m1-cA 191 32 0.1954 0.0890 0.5312 0.008 7vzo-a1-m1-cA_7vzo-a1-m1-cB
9 1v05-a1-m2-cA 96 90 0.3793 0.3438 0.3667 1.38e-10 1v05-a1-m1-cA_1v05-a1-m2-cA
10 1v05-a1-m1-cA 96 90 0.3793 0.3438 0.3667 1.38e-10 1v05-a1-m1-cA_1v05-a1-m2-cA
11 3cnk-a1-m1-cB 89 88 0.3678 0.3596 0.3636 1.76e-10 3cnk-a1-m1-cA_3cnk-a1-m1-cB
12 3cnk-a1-m1-cA 89 88 0.3678 0.3596 0.3636 1.76e-10 3cnk-a1-m1-cA_3cnk-a1-m1-cB
13 7ouu-a1-m1-cB 204 90 0.4138 0.1765 0.4000 7.51e-10 7ouu-a1-m1-cA_7ouu-a1-m1-cB
14 7ouu-a1-m1-cB 204 90 0.3218 0.1373 0.3111 1.11e-06 7ouu-a1-m1-cA_7ouu-a1-m1-cB
15 7ouu-a1-m1-cA 202 90 0.4138 0.1782 0.4000 8.08e-10 7ouu-a1-m1-cA_7ouu-a1-m1-cB
16 7ouu-a1-m1-cA 202 90 0.3218 0.1386 0.3111 1.15e-06 7ouu-a1-m1-cA_7ouu-a1-m1-cB
17 7ouv-a1-m1-cB 202 90 0.4023 0.1733 0.3889 5.11e-09 7ouv-a1-m1-cB_7ouv-a1-m1-cA
18 7ouv-a1-m1-cB 202 90 0.3218 0.1386 0.3111 1.06e-06 7ouv-a1-m1-cB_7ouv-a1-m1-cA
19 7ouv-a1-m1-cA 204 90 0.4023 0.1716 0.3889 5.42e-09 7ouv-a1-m1-cB_7ouv-a1-m1-cA
20 7ouv-a1-m1-cA 204 90 0.3218 0.1373 0.3111 1.09e-06 7ouv-a1-m1-cB_7ouv-a1-m1-cA
21 5xxz-a1-m1-cB 1285 50 0.2069 0.0140 0.3600 0.33 5xxz-a1-m1-cB_5xxz-a1-m1-cA
22 5xxz-a1-m1-cA 1309 50 0.2069 0.0138 0.3600 0.33 5xxz-a1-m1-cB_5xxz-a1-m1-cA
23 3dor-a2-m2-cB 527 56 0.2299 0.0380 0.3571 0.90 3dor-a2-m1-cA_3dor-a2-m2-cB
24 3dor-a1-m1-cB 527 56 0.2299 0.0380 0.3571 0.90 3dor-a1-m1-cA_3dor-a1-m1-cB
25 3dor-a2-m1-cA 522 56 0.2299 0.0383 0.3571 1.0 3dor-a2-m1-cA_3dor-a2-m2-cB
26 3dor-a1-m1-cA 522 56 0.2299 0.0383 0.3571 1.0 3dor-a1-m1-cA_3dor-a1-m1-cB
27 4bqm-a1-m2-cA 296 40 0.1839 0.0541 0.4000 3.3 4bqm-a1-m2-cA_4bqm-a1-m2-cB
28 4bqm-a1-m1-cA 296 40 0.1839 0.0541 0.4000 3.3 4bqm-a1-m1-cA_4bqm-a1-m2-cB
29 1qfh-a1-m1-cB 212 67 0.1954 0.0802 0.2537 4.9 1qfh-a1-m1-cA_1qfh-a1-m1-cB
30 1qfh-a1-m1-cA 212 67 0.1954 0.0802 0.2537 4.9 1qfh-a1-m1-cA_1qfh-a1-m1-cB
31 2exh-a2-m2-cC 533 25 0.1034 0.0169 0.3600 9.8 2exh-a2-m2-cB_2exh-a2-m2-cC
32 2exh-a2-m2-cB 533 25 0.1034 0.0169 0.3600 9.8 2exh-a2-m1-cA_2exh-a2-m2-cB, 2exh-a2-m2-cB_2exh-a2-m2-cC
33 2exh-a2-m1-cA 533 25 0.1034 0.0169 0.3600 9.8 2exh-a2-m1-cA_2exh-a2-m2-cB
34 2exh-a1-m1-cD 533 25 0.1034 0.0169 0.3600 9.8 2exh-a1-m1-cB_2exh-a1-m1-cD
35 2exh-a1-m1-cB 533 25 0.1034 0.0169 0.3600 9.8 2exh-a1-m1-cB_2exh-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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