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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=58)
GAMDTLYAILDEKKSELLQRITQEQEEKLSFIEALIQQYQEQLDKSTKLVETAIQSLD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4m3l-a1-m1-cA 60 58 1.0000 0.9667 1.0000 2.05e-34 4m3l-a1-m1-cD_4m3l-a1-m1-cA
2 4m3l-a1-m1-cB 58 58 1.0000 1.0000 1.0000 2.10e-34 4m3l-a1-m1-cD_4m3l-a1-m1-cB
3 4m3l-a1-m1-cC 57 57 0.9828 1.0000 1.0000 2.99e-33 4m3l-a1-m1-cD_4m3l-a1-m1-cC
4 4m3l-a1-m1-cD 53 53 0.9138 1.0000 1.0000 1.02e-29 4m3l-a1-m1-cD_4m3l-a1-m1-cA, 4m3l-a1-m1-cD_4m3l-a1-m1-cB, 4m3l-a1-m1-cD_4m3l-a1-m1-cC
5 1fvf-a1-m1-cB 543 46 0.2759 0.0295 0.3478 1.7 1fvf-a1-m1-cA_1fvf-a1-m1-cB
6 1fvf-a1-m1-cA 543 46 0.2759 0.0295 0.3478 1.7 1fvf-a1-m1-cA_1fvf-a1-m1-cB
7 4fdi-a1-m1-cB 491 22 0.1724 0.0204 0.4545 4.7 4fdi-a1-m1-cB_4fdi-a1-m1-cA
8 4fdi-a1-m1-cA 493 22 0.1724 0.0203 0.4545 4.7 4fdi-a1-m1-cB_4fdi-a1-m1-cA
9 3r84-a19-m1-cC 79 27 0.2069 0.1519 0.4444 6.4 3r84-a19-m1-cC_3r84-a19-m1-cA
10 3r84-a19-m1-cA 80 27 0.2069 0.1500 0.4444 7.0 3r84-a19-m1-cC_3r84-a19-m1-cA
11 6x1i-a1-m6-cA 171 41 0.2069 0.0702 0.2927 7.1 6x1i-a1-m5-cA_6x1i-a1-m6-cA
12 6x1i-a1-m5-cA 171 41 0.2069 0.0702 0.2927 7.1 6x1i-a1-m5-cA_6x1i-a1-m6-cA
13 2xro-a1-m1-cE 239 37 0.2241 0.0544 0.3514 7.8 2xro-a1-m1-cE_2xro-a1-m1-cF
14 2xro-a1-m1-cA 239 37 0.2241 0.0544 0.3514 7.8 2xro-a1-m1-cA_2xro-a1-m1-cF
15 2xrn-a1-m2-cA 239 37 0.2241 0.0544 0.3514 7.8 2xrn-a1-m2-cA_2xrn-a1-m2-cB
16 2xro-a1-m1-cF 240 37 0.2241 0.0542 0.3514 8.2 2xro-a1-m1-cA_2xro-a1-m1-cF, 2xro-a1-m1-cB_2xro-a1-m1-cF, 2xro-a1-m1-cE_2xro-a1-m1-cF
17 2xro-a1-m1-cB 240 37 0.2241 0.0542 0.3514 8.2 2xro-a1-m1-cB_2xro-a1-m1-cF
18 2xrn-a1-m2-cB 241 37 0.2241 0.0539 0.3514 8.3 2xrn-a1-m1-cB_2xrn-a1-m2-cB, 2xrn-a1-m2-cA_2xrn-a1-m2-cB
19 2xrn-a1-m1-cB 241 37 0.2241 0.0539 0.3514 8.3 2xrn-a1-m1-cB_2xrn-a1-m2-cB

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Reference:
Jacob Schwartz et al.

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