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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
GAPSATQPATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED
FVHLRVFQSLPHENKSLTLSNYQTNKAKHDELTYF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2oct-a1-m2-cA 97 95 1.0000 0.9794 1.0000 1.90e-67 2oct-a1-m2-cB_2oct-a1-m2-cA
2 2oct-a1-m1-cA 97 95 1.0000 0.9794 1.0000 1.90e-67 2oct-a1-m2-cB_2oct-a1-m1-cA
3 2oct-a1-m2-cB 95 95 1.0000 1.0000 1.0000 2.90e-67 2oct-a1-m1-cB_2oct-a1-m2-cB, 2oct-a1-m2-cB_2oct-a1-m1-cA, 2oct-a1-m2-cB_2oct-a1-m2-cA
4 2oct-a1-m1-cB 95 95 1.0000 1.0000 1.0000 2.90e-67 2oct-a1-m1-cB_2oct-a1-m2-cB
5 1n9j-a1-m1-cB 98 95 0.5368 0.5204 0.5368 5.34e-33 1n9j-a1-m1-cA_1n9j-a1-m1-cB
6 1n9j-a1-m1-cA 98 95 0.5368 0.5204 0.5368 5.34e-33 1n9j-a1-m1-cA_1n9j-a1-m1-cB
7 3qrd-a3-m4-cC 108 23 0.1158 0.1019 0.4783 0.22 3qrd-a3-m2-cB_3qrd-a3-m4-cC, 3qrd-a3-m4-cC_3qrd-a3-m4-cD
8 3qrd-a3-m2-cB 104 23 0.1158 0.1058 0.4783 0.27 3qrd-a3-m2-cB_3qrd-a3-m2-cA, 3qrd-a3-m2-cB_3qrd-a3-m4-cC
9 3qrd-a3-m4-cD 111 23 0.1158 0.0991 0.4783 0.29 3qrd-a3-m1-cA_3qrd-a3-m4-cD, 3qrd-a3-m4-cC_3qrd-a3-m4-cD
10 3qrd-a3-m2-cA 111 23 0.1158 0.0991 0.4783 0.29 3qrd-a3-m2-cB_3qrd-a3-m2-cA
11 3qrd-a3-m1-cA 111 23 0.1158 0.0991 0.4783 0.29 3qrd-a3-m1-cA_3qrd-a3-m4-cD
12 1tij-a1-m1-cA 114 23 0.1053 0.0877 0.4348 0.61 1tij-a1-m1-cB_1tij-a1-m1-cA
13 1tij-a1-m1-cB 112 23 0.1053 0.0893 0.4348 0.65 1tij-a1-m1-cB_1tij-a1-m1-cA
14 1r4c-a8-m5-cH 110 23 0.1053 0.0909 0.4348 0.65 1r4c-a8-m1-cC_1r4c-a8-m5-cH, 1r4c-a8-m1-cD_1r4c-a8-m5-cH
15 1r4c-a8-m5-cG 110 23 0.1053 0.0909 0.4348 0.65 1r4c-a8-m1-cD_1r4c-a8-m5-cG
16 1r4c-a8-m1-cD 110 23 0.1053 0.0909 0.4348 0.65 1r4c-a8-m1-cD_1r4c-a8-m5-cG, 1r4c-a8-m1-cD_1r4c-a8-m5-cH
17 1r4c-a8-m1-cC 110 23 0.1053 0.0909 0.4348 0.65 1r4c-a8-m1-cC_1r4c-a8-m5-cH
18 3ovg-a6-m1-cE 344 44 0.1684 0.0465 0.3636 4.7 3ovg-a6-m1-cD_3ovg-a6-m1-cE
19 3ovg-a6-m1-cD 344 44 0.1684 0.0465 0.3636 4.7 3ovg-a6-m1-cD_3ovg-a6-m1-cE
20 3ovg-a5-m1-cF 344 44 0.1684 0.0465 0.3636 4.7 3ovg-a5-m1-cD_3ovg-a5-m1-cF
21 3ovg-a5-m1-cD 344 44 0.1684 0.0465 0.3636 4.7 3ovg-a5-m1-cD_3ovg-a5-m1-cF
22 4zm8-a2-m1-cD 109 25 0.1158 0.1009 0.4400 5.8 4zm8-a2-m1-cC_4zm8-a2-m1-cD
23 4zm8-a2-m1-cC 109 25 0.1158 0.1009 0.4400 5.9 4zm8-a2-m1-cC_4zm8-a2-m1-cD
24 6fk0-a1-m1-cB 111 23 0.0947 0.0811 0.3913 5.9 6fk0-a1-m1-cB_6fk0-a1-m1-cA
25 3zke-a3-m1-cK 85 54 0.1579 0.1765 0.2778 6.1 3zke-a3-m1-cI_3zke-a3-m1-cK
26 3zke-a3-m1-cI 85 54 0.1579 0.1765 0.2778 6.1 3zke-a3-m1-cI_3zke-a3-m1-cK
27 3sva-a2-m8-cA 111 23 0.0947 0.0811 0.3913 6.8 3sva-a2-m2-cA_3sva-a2-m8-cA, 3sva-a2-m3-cA_3sva-a2-m8-cA, 3sva-a2-m4-cA_3sva-a2-m8-cA, 3sva-a2-m7-cA_3sva-a2-m8-cA
28 3sva-a2-m7-cA 111 23 0.0947 0.0811 0.3913 6.8 3sva-a2-m7-cA_3sva-a2-m8-cA
29 3sva-a2-m4-cA 111 23 0.0947 0.0811 0.3913 6.8 3sva-a2-m4-cA_3sva-a2-m8-cA
30 3sva-a2-m3-cA 111 23 0.0947 0.0811 0.3913 6.8 3sva-a2-m3-cA_3sva-a2-m8-cA
31 3sva-a2-m2-cA 111 23 0.0947 0.0811 0.3913 6.8 3sva-a2-m2-cA_3sva-a2-m8-cA
32 6fk0-a1-m1-cA 113 23 0.0947 0.0796 0.3913 7.4 6fk0-a1-m1-cB_6fk0-a1-m1-cA
33 5wx4-a2-m1-cC 391 24 0.1053 0.0256 0.4167 7.8 5wx4-a2-m1-cB_5wx4-a2-m1-cC
34 5wx4-a2-m1-cB 391 24 0.1053 0.0256 0.4167 7.8 5wx4-a2-m1-cB_5wx4-a2-m1-cC
35 7rsf-a1-m1-cB 379 23 0.0947 0.0237 0.3913 9.6 7rsf-a1-m1-cB_7rsf-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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