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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
GASLDGRPGDRVDLSCGGVRWVWAPSFPACKGLSKGRRPILWAAAAGAPTVPPLQPFVGR
IRRLELLLSAGDSGTFFCKGRHEDESRTVLHVLGDRTYC

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6r0x-a1-m1-cE 99 99 1.0000 1.0000 1.0000 3.78e-68 6r0x-a1-m1-cF_6r0x-a1-m1-cE
2 6r0x-a1-m1-cF 98 97 0.9798 0.9898 1.0000 8.50e-66 6r0x-a1-m1-cF_6r0x-a1-m1-cE
3 2fno-a3-m3-cB 228 66 0.1818 0.0789 0.2727 1.1 2fno-a3-m1-cB_2fno-a3-m3-cB
4 2fno-a3-m1-cB 228 66 0.1818 0.0789 0.2727 1.1 2fno-a3-m1-cB_2fno-a3-m3-cB
5 5nks-a1-m4-cA 490 40 0.1616 0.0327 0.4000 1.2 5nks-a1-m1-cA_5nks-a1-m4-cA, 5nks-a1-m3-cA_5nks-a1-m4-cA
6 5nks-a1-m3-cA 490 40 0.1616 0.0327 0.4000 1.2 5nks-a1-m3-cA_5nks-a1-m4-cA
7 5nks-a1-m1-cA 490 40 0.1616 0.0327 0.4000 1.2 5nks-a1-m1-cA_5nks-a1-m4-cA
8 6a28-a1-m1-cB 227 78 0.2525 0.1101 0.3205 1.4 6a28-a1-m1-cB_6a28-a1-m1-cA
9 6a28-a1-m1-cA 236 78 0.2525 0.1059 0.3205 1.5 6a28-a1-m1-cB_6a28-a1-m1-cA
10 4cns-a1-m1-cB 477 40 0.1616 0.0335 0.4000 1.9 4cns-a1-m1-cB_4cns-a1-m1-cA, 4cns-a1-m1-cB_4cns-a1-m1-cC
11 4cns-a1-m1-cC 478 40 0.1616 0.0335 0.4000 1.9 4cns-a1-m1-cB_4cns-a1-m1-cC
12 4cns-a1-m1-cA 478 40 0.1616 0.0335 0.4000 1.9 4cns-a1-m1-cB_4cns-a1-m1-cA
13 1xfd-a2-m1-cD 723 25 0.1111 0.0152 0.4400 3.9 1xfd-a2-m1-cC_1xfd-a2-m1-cD
14 1xfd-a2-m1-cC 723 25 0.1111 0.0152 0.4400 3.9 1xfd-a2-m1-cC_1xfd-a2-m1-cD
15 1olz-a1-m1-cB 621 42 0.1414 0.0225 0.3333 4.0 1olz-a1-m1-cA_1olz-a1-m1-cB
16 1olz-a1-m1-cA 621 42 0.1414 0.0225 0.3333 4.0 1olz-a1-m1-cA_1olz-a1-m1-cB
17 5muh-a1-m1-cA 194 26 0.1010 0.0515 0.3846 5.1 5muh-a1-m1-cB_5muh-a1-m1-cA
18 4b3z-a1-m1-cB 469 31 0.1414 0.0299 0.4516 5.9 4b3z-a1-m1-cB_4b3z-a1-m1-cD
19 4b3z-a1-m1-cD 477 31 0.1414 0.0294 0.4516 6.2 4b3z-a1-m1-cB_4b3z-a1-m1-cD
20 1kcx-a1-m1-cB 476 31 0.1414 0.0294 0.4516 7.1 1kcx-a1-m1-cA_1kcx-a1-m1-cB
21 1kcx-a1-m1-cA 476 31 0.1414 0.0294 0.4516 7.1 1kcx-a1-m1-cA_1kcx-a1-m1-cB
22 3ogk-a1-m1-cP 566 55 0.2020 0.0353 0.3636 8.3 3ogk-a1-m1-cL_3ogk-a1-m1-cP
23 3ogk-a1-m1-cL 566 55 0.2020 0.0353 0.3636 8.3 3ogk-a1-m1-cF_3ogk-a1-m1-cL, 3ogk-a1-m1-cL_3ogk-a1-m1-cP
24 3ogk-a1-m1-cF 566 55 0.2020 0.0353 0.3636 8.3 3ogk-a1-m1-cF_3ogk-a1-m1-cL

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Reference:
Jacob Schwartz et al.

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