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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
GDTTITIVGNLTADPELRFTPSGAAVANFTVASTEALFLRCNIWREAAENVAESLTRGAR
VIVSGRLKQRSTVIEVEVDEIGPSLRYATAKVNKASRS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1ue7-a1-m2-cB 98 98 1.0000 1.0000 1.0000 1.03e-66 1ue7-a1-m2-cB_1ue7-a1-m1-cA, 1ue7-a1-m2-cB_1ue7-a1-m2-cA
2 1ue7-a2-m3-cD 95 95 0.9490 0.9789 0.9789 4.91e-61 1ue7-a2-m1-cD_1ue7-a2-m3-cD
3 1ue7-a2-m1-cD 95 95 0.9490 0.9789 0.9789 4.91e-61 1ue7-a2-m1-cD_1ue7-a2-m3-cD
4 1ue7-a1-m2-cA 106 106 0.9898 0.9151 0.9151 6.42e-61 1ue7-a1-m2-cB_1ue7-a1-m2-cA
5 1ue7-a1-m1-cA 106 106 0.9898 0.9151 0.9151 6.42e-61 1ue7-a1-m2-cB_1ue7-a1-m1-cA
6 1ue1-a1-m2-cB 119 118 1.0000 0.8235 0.8305 1.44e-59 1ue1-a1-m1-cB_1ue1-a1-m2-cB
7 1ue1-a1-m1-cB 119 118 1.0000 0.8235 0.8305 1.44e-59 1ue1-a1-m1-cB_1ue1-a1-m2-cB
8 7f5y-a1-m2-cA 109 105 0.9592 0.8624 0.8952 7.08e-59 7f5y-a1-m2-cA_7f5y-a1-m2-cB
9 7f5z-a1-m2-cB 118 116 0.9694 0.8051 0.8190 1.46e-57 7f5z-a1-m1-cB_7f5z-a1-m2-cB, 7f5z-a1-m2-cA_7f5z-a1-m2-cB
10 7f5z-a1-m1-cB 118 116 0.9694 0.8051 0.8190 1.46e-57 7f5z-a1-m1-cB_7f5z-a1-m2-cB
11 7f5y-a1-m2-cB 120 118 0.9694 0.7917 0.8051 3.36e-57 7f5y-a1-m2-cA_7f5y-a1-m2-cB
12 1x3e-a1-m2-cA 110 110 0.9286 0.8273 0.8273 4.29e-57 1x3e-a1-m1-cA_1x3e-a1-m2-cA, 1x3e-a1-m2-cA_1x3e-a1-m2-cB
13 1x3e-a1-m1-cA 110 110 0.9286 0.8273 0.8273 4.29e-57 1x3e-a1-m1-cA_1x3e-a1-m2-cA
14 7f5z-a1-m2-cA 117 115 0.9592 0.8034 0.8174 7.59e-57 7f5z-a1-m2-cA_7f5z-a1-m2-cB
15 3a5u-a1-m2-cB 112 110 0.9184 0.8036 0.8182 2.24e-56 3a5u-a1-m2-cB_3a5u-a1-m2-cA
16 1x3e-a1-m2-cB 119 118 0.9286 0.7647 0.7712 8.37e-56 1x3e-a1-m2-cA_1x3e-a1-m2-cB
17 3a5u-a1-m2-cA 118 116 0.9184 0.7627 0.7759 1.99e-55 3a5u-a1-m1-cA_3a5u-a1-m2-cA, 3a5u-a1-m2-cB_3a5u-a1-m2-cA
18 3a5u-a1-m1-cA 118 116 0.9184 0.7627 0.7759 1.99e-55 3a5u-a1-m1-cA_3a5u-a1-m2-cA
19 3eiv-a3-m1-cD 100 98 0.7347 0.7200 0.7347 7.18e-46 3eiv-a3-m1-cD_3eiv-a3-m1-cC
20 3eiv-a1-m1-cD 100 98 0.7347 0.7200 0.7347 7.18e-46 3eiv-a1-m1-cA_3eiv-a1-m1-cD
21 3eiv-a2-m1-cA 98 97 0.7245 0.7245 0.7320 2.79e-43 3eiv-a2-m1-cA_3eiv-a2-m1-cB
22 3eiv-a1-m1-cA 98 97 0.7245 0.7245 0.7320 2.79e-43 3eiv-a1-m1-cA_3eiv-a1-m1-cD
23 3eiv-a2-m1-cB 111 108 0.7347 0.6486 0.6667 1.26e-42 3eiv-a2-m1-cA_3eiv-a2-m1-cB
24 3eiv-a3-m1-cC 111 109 0.7347 0.6486 0.6606 3.10e-42 3eiv-a3-m1-cD_3eiv-a3-m1-cC
25 6bhx-a1-m1-cA 98 86 0.4286 0.4286 0.4884 2.56e-19 6bhx-a1-m1-cA_6bhx-a1-m1-cC
26 6bhw-a2-m1-cF 96 89 0.4184 0.4271 0.4607 1.95e-18 6bhw-a2-m1-cF_6bhw-a2-m1-cE
27 6bhx-a1-m1-cC 102 90 0.4184 0.4020 0.4556 5.68e-18 6bhx-a1-m1-cA_6bhx-a1-m1-cC
28 6bhw-a2-m1-cE 99 72 0.3776 0.3737 0.5139 6.83e-18 6bhw-a2-m1-cE_6bhw-a2-m1-cG, 6bhw-a2-m1-cF_6bhw-a2-m1-cE
29 6bhw-a2-m1-cG 101 74 0.3776 0.3663 0.5000 1.54e-17 6bhw-a2-m1-cE_6bhw-a2-m1-cG
30 3vdy-a1-m1-cA 101 87 0.3673 0.3564 0.4138 9.90e-17 3vdy-a1-m2-cB_3vdy-a1-m1-cA
31 3vdy-a1-m2-cB 97 88 0.3673 0.3711 0.4091 5.11e-15 3vdy-a1-m1-cB_3vdy-a1-m2-cB, 3vdy-a1-m2-cB_3vdy-a1-m1-cA
32 3vdy-a1-m1-cB 97 88 0.3673 0.3711 0.4091 5.11e-15 3vdy-a1-m1-cB_3vdy-a1-m2-cB
33 5xgt-a1-m1-cA 104 77 0.3265 0.3077 0.4156 3.35e-13 5xgt-a1-m1-cA_5xgt-a1-m1-cB
34 5xgt-a1-m1-cB 105 77 0.3265 0.3048 0.4156 3.58e-13 5xgt-a1-m1-cA_5xgt-a1-m1-cB
35 7d8j-a1-m2-cB 98 84 0.3367 0.3367 0.3929 1.32e-12 7d8j-a1-m2-cB_7d8j-a1-m1-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
36 1sru-a1-m1-cD 101 74 0.2857 0.2772 0.3784 3.23e-12 1sru-a1-m1-cA_1sru-a1-m1-cD
37 1sru-a1-m1-cA 100 74 0.2857 0.2800 0.3784 3.41e-12 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
38 7d8j-a1-m2-cA 112 77 0.3061 0.2679 0.3896 1.98e-11 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
39 7d8j-a1-m1-cA 112 77 0.3061 0.2679 0.3896 1.98e-11 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m1-cA
40 3udg-a2-m1-cC 214 81 0.2959 0.1355 0.3580 2.83e-11 3udg-a2-m1-cB_3udg-a2-m1-cC
41 3udg-a2-m1-cC 214 80 0.2857 0.1308 0.3500 1.64e-04 3udg-a2-m1-cB_3udg-a2-m1-cC
42 3tqy-a1-m1-cD 96 74 0.2755 0.2812 0.3649 5.12e-11 3tqy-a1-m1-cD_3tqy-a1-m1-cC
43 4mz9-a1-m1-cD 114 83 0.2857 0.2456 0.3373 1.10e-10 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
44 4mz9-a1-m1-cC 114 83 0.2857 0.2456 0.3373 1.10e-10 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
45 4mz9-a1-m1-cB 114 83 0.2857 0.2456 0.3373 1.10e-10 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
46 3udg-a2-m1-cB 214 80 0.2755 0.1262 0.3375 3.06e-10 3udg-a2-m1-cB_3udg-a2-m1-cC
47 3udg-a2-m1-cB 214 78 0.2857 0.1308 0.3590 9.07e-05 3udg-a2-m1-cB_3udg-a2-m1-cC
48 2ihf-a1-m2-cA 205 67 0.2959 0.1415 0.4328 3.78e-10 2ihf-a1-m1-cA_2ihf-a1-m2-cA
49 2ihf-a1-m2-cA 205 83 0.2347 0.1122 0.2771 1.63e-06 2ihf-a1-m1-cA_2ihf-a1-m2-cA
50 2ihf-a1-m1-cA 205 67 0.2959 0.1415 0.4328 3.78e-10 2ihf-a1-m1-cA_2ihf-a1-m2-cA
51 2ihf-a1-m1-cA 205 83 0.2347 0.1122 0.2771 1.63e-06 2ihf-a1-m1-cA_2ihf-a1-m2-cA
52 2fxq-a1-m2-cA 197 65 0.2959 0.1472 0.4462 5.19e-10 2fxq-a1-m1-cA_2fxq-a1-m2-cA
53 2fxq-a1-m2-cA 197 95 0.2857 0.1421 0.2947 1.18e-07 2fxq-a1-m1-cA_2fxq-a1-m2-cA
54 2fxq-a1-m1-cA 197 65 0.2959 0.1472 0.4462 5.19e-10 2fxq-a1-m1-cA_2fxq-a1-m2-cA
55 2fxq-a1-m1-cA 197 95 0.2857 0.1421 0.2947 1.18e-07 2fxq-a1-m1-cA_2fxq-a1-m2-cA
56 5odn-a1-m1-cH 99 73 0.2755 0.2727 0.3699 5.28e-10 5odn-a1-m1-cA_5odn-a1-m1-cH
57 5odn-a1-m1-cA 99 73 0.2755 0.2727 0.3699 5.28e-10 5odn-a1-m1-cA_5odn-a1-m1-cD, 5odn-a1-m1-cA_5odn-a1-m1-cH
58 5odn-a1-m1-cC 102 75 0.2755 0.2647 0.3600 5.28e-10 5odn-a1-m1-cC_5odn-a1-m1-cF
59 5odn-a1-m1-cD 106 74 0.2755 0.2547 0.3649 6.91e-10 5odn-a1-m1-cA_5odn-a1-m1-cD
60 3tqy-a1-m1-cC 106 84 0.2755 0.2547 0.3214 1.47e-09 3tqy-a1-m1-cD_3tqy-a1-m1-cC
61 5odn-a1-m1-cF 105 79 0.2755 0.2571 0.3418 2.83e-09 5odn-a1-m1-cC_5odn-a1-m1-cF
62 5odn-a1-m1-cE 105 79 0.2653 0.2476 0.3291 8.81e-09 5odn-a1-m1-cG_5odn-a1-m1-cE
63 5odn-a1-m1-cG 102 83 0.2755 0.2647 0.3253 9.13e-09 5odn-a1-m1-cG_5odn-a1-m1-cE
64 7f25-a1-m1-cB 106 79 0.2755 0.2547 0.3418 2.28e-08 7f25-a1-m1-cA_7f25-a1-m1-cB
65 7f25-a1-m1-cA 106 79 0.2755 0.2547 0.3418 2.28e-08 7f25-a1-m1-cA_7f25-a1-m1-cB
66 5odp-a1-m1-cA 99 93 0.2959 0.2929 0.3118 2.82e-08 5odp-a1-m1-cA_5odp-a1-m1-cG
67 5gqo-a1-m2-cB 98 99 0.3367 0.3367 0.3333 7.75e-08 5gqo-a1-m1-cB_5gqo-a1-m2-cB
68 5gqo-a1-m1-cB 98 99 0.3367 0.3367 0.3333 7.75e-08 5gqo-a1-m1-cB_5gqo-a1-m2-cB
69 1sru-a1-m1-cC 96 74 0.2653 0.2708 0.3514 1.56e-07 1sru-a1-m1-cC_1sru-a1-m1-cA
70 1kaw-a1-m1-cD 96 73 0.2653 0.2708 0.3562 2.08e-07 1kaw-a1-m1-cC_1kaw-a1-m1-cD
71 1kaw-a1-m1-cC 96 73 0.2653 0.2708 0.3562 2.08e-07 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
72 1kaw-a1-m1-cA 96 73 0.2653 0.2708 0.3562 2.08e-07 1kaw-a1-m1-cA_1kaw-a1-m1-cC
73 1se8-a1-m2-cA 205 79 0.2755 0.1317 0.3418 2.30e-07 1se8-a1-m1-cA_1se8-a1-m2-cA
74 1se8-a1-m2-cA 205 73 0.2755 0.1317 0.3699 0.006 1se8-a1-m1-cA_1se8-a1-m2-cA
75 1se8-a1-m1-cA 205 79 0.2755 0.1317 0.3418 2.30e-07 1se8-a1-m1-cA_1se8-a1-m2-cA
76 1se8-a1-m1-cA 205 73 0.2755 0.1317 0.3699 0.006 1se8-a1-m1-cA_1se8-a1-m2-cA
77 3pgz-a1-m1-cA 109 83 0.2449 0.2202 0.2892 5.89e-07 3pgz-a1-m1-cA_3pgz-a1-m1-cB
78 5odp-a1-m1-cG 100 93 0.2857 0.2800 0.3011 5.96e-07 5odp-a1-m1-cA_5odp-a1-m1-cG
79 3pgz-a1-m1-cB 114 88 0.2449 0.2105 0.2727 5.19e-06 3pgz-a1-m1-cA_3pgz-a1-m1-cB
80 2vw9-a1-m2-cB 105 79 0.2347 0.2190 0.2911 1.52e-05 2vw9-a1-m1-cB_2vw9-a1-m2-cB
81 2vw9-a1-m1-cB 105 79 0.2347 0.2190 0.2911 1.52e-05 2vw9-a1-m1-cB_2vw9-a1-m2-cB
82 1z9f-a2-m4-cA 89 75 0.2551 0.2809 0.3333 4.84e-04 1z9f-a2-m1-cA_1z9f-a2-m4-cA, 1z9f-a2-m3-cA_1z9f-a2-m4-cA
83 1z9f-a2-m3-cA 89 75 0.2551 0.2809 0.3333 4.84e-04 1z9f-a2-m3-cA_1z9f-a2-m4-cA
84 1z9f-a2-m1-cA 89 75 0.2551 0.2809 0.3333 4.84e-04 1z9f-a2-m1-cA_1z9f-a2-m4-cA
85 3lgj-a1-m1-cA 95 73 0.2143 0.2211 0.2877 8.00e-04 3lgj-a1-m1-cA_3lgj-a1-m1-cB
86 3lgj-a1-m1-cB 97 73 0.2143 0.2165 0.2877 8.26e-04 3lgj-a1-m1-cA_3lgj-a1-m1-cB
87 3ulp-a1-m1-cA 114 59 0.1633 0.1404 0.2712 0.009 3ulp-a1-m1-cD_3ulp-a1-m1-cA
88 3ulp-a1-m1-cC 116 59 0.1633 0.1379 0.2712 0.009 3ulp-a1-m1-cD_3ulp-a1-m1-cC
89 4dam-a2-m1-cG 98 90 0.2959 0.2959 0.3222 0.046 4dam-a2-m1-cG_4dam-a2-m1-cH
90 4dam-a2-m1-cH 108 83 0.2857 0.2593 0.3373 0.048 4dam-a2-m1-cG_4dam-a2-m1-cH
91 4dam-a2-m1-cE 112 85 0.2959 0.2589 0.3412 0.058 4dam-a2-m1-cF_4dam-a2-m1-cE
92 4dam-a3-m1-cI 110 85 0.2959 0.2636 0.3412 0.063 4dam-a3-m1-cL_4dam-a3-m1-cI
93 4dam-a2-m1-cF 110 85 0.2959 0.2636 0.3412 0.063 4dam-a2-m1-cF_4dam-a2-m1-cE
94 3ulp-a1-m1-cB 114 80 0.2143 0.1842 0.2625 0.082 3ulp-a1-m1-cD_3ulp-a1-m1-cB
95 4h0u-a2-m1-cD 254 41 0.1429 0.0551 0.3415 0.094 4h0u-a2-m1-cC_4h0u-a2-m1-cD
96 4h0u-a2-m1-cC 254 41 0.1429 0.0551 0.3415 0.095 4h0u-a2-m1-cC_4h0u-a2-m1-cD
97 3ulp-a1-m1-cD 113 86 0.2143 0.1858 0.2442 0.15 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
98 4dam-a3-m1-cL 100 93 0.2959 0.2900 0.3118 0.16 4dam-a3-m1-cL_4dam-a3-m1-cI
99 3jz4-a1-m1-cD 481 23 0.0918 0.0187 0.3913 2.7 3jz4-a1-m1-cA_3jz4-a1-m1-cD, 3jz4-a1-m1-cB_3jz4-a1-m1-cD, 3jz4-a1-m1-cC_3jz4-a1-m1-cD
100 3jz4-a1-m1-cC 481 23 0.0918 0.0187 0.3913 2.7 3jz4-a1-m1-cC_3jz4-a1-m1-cD
101 3jz4-a1-m1-cB 481 23 0.0918 0.0187 0.3913 2.7 3jz4-a1-m1-cB_3jz4-a1-m1-cD
102 3jz4-a1-m1-cA 481 23 0.0918 0.0187 0.3913 2.7 3jz4-a1-m1-cA_3jz4-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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