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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=78)
GFCEVCKKLVLYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDDFVAEYEPLLLEIL
VEVMDPGFVCSKIGVCPS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5u85-a1-m1-cA 78 78 1.0000 1.0000 1.0000 4.86e-52 5u85-a1-m1-cB_5u85-a1-m1-cA
2 5u85-a1-m1-cB 77 77 0.9872 1.0000 1.0000 2.43e-51 5u85-a1-m1-cB_5u85-a1-m1-cA
3 2rb3-a2-m1-cC 79 78 0.8718 0.8608 0.8718 2.41e-45 2rb3-a2-m1-cB_2rb3-a2-m1-cC
4 2rb3-a2-m1-cB 79 78 0.8718 0.8608 0.8718 2.41e-45 2rb3-a2-m1-cB_2rb3-a2-m1-cC
5 2dob-a2-m2-cA 79 76 0.3974 0.3924 0.4079 1.14e-13 2dob-a2-m1-cA_2dob-a2-m2-cA
6 2dob-a2-m1-cA 79 76 0.3974 0.3924 0.4079 1.14e-13 2dob-a2-m1-cA_2dob-a2-m2-cA
7 2qyp-a1-m1-cA 78 75 0.3718 0.3718 0.3867 1.52e-11 2qyp-a1-m1-cA_2qyp-a1-m1-cB
8 2qyp-a1-m1-cB 81 75 0.3718 0.3580 0.3867 1.64e-11 2qyp-a1-m1-cA_2qyp-a1-m1-cB
9 7p4t-a1-m1-cD 80 76 0.3590 0.3500 0.3684 2.57e-10 7p4t-a1-m1-cA_7p4t-a1-m1-cD, 7p4t-a1-m1-cC_7p4t-a1-m1-cD
10 7p4t-a1-m1-cC 80 76 0.3590 0.3500 0.3684 2.57e-10 7p4t-a1-m1-cB_7p4t-a1-m1-cC, 7p4t-a1-m1-cC_7p4t-a1-m1-cD
11 7p4t-a1-m1-cB 80 76 0.3590 0.3500 0.3684 2.57e-10 7p4t-a1-m1-cB_7p4t-a1-m1-cC
12 7p4t-a1-m1-cA 80 76 0.3590 0.3500 0.3684 2.57e-10 7p4t-a1-m1-cA_7p4t-a1-m1-cD
13 5nxb-a1-m1-cD 80 76 0.3590 0.3500 0.3684 2.57e-10 5nxb-a1-m1-cC_5nxb-a1-m1-cD
14 5nxb-a1-m1-cC 80 76 0.3590 0.3500 0.3684 2.57e-10 5nxb-a1-m1-cC_5nxb-a1-m1-cD
15 6vz0-a1-m1-cB 76 75 0.2564 0.2632 0.2667 7.29e-05 6vz0-a1-m1-cA_6vz0-a1-m1-cB
16 6vze-a1-m1-cC 74 75 0.2564 0.2703 0.2667 7.56e-05 6vze-a1-m1-cB_6vze-a1-m1-cC
17 6vz0-a1-m1-cA 74 75 0.2564 0.2703 0.2667 7.56e-05 6vz0-a1-m1-cA_6vz0-a1-m1-cB
18 6vze-a1-m1-cB 73 75 0.2564 0.2740 0.2667 7.57e-05 6vze-a1-m1-cB_6vze-a1-m1-cC, 6vze-a1-m1-cD_6vze-a1-m1-cB
19 6vze-a1-m1-cD 72 75 0.2564 0.2778 0.2667 7.83e-05 6vze-a1-m1-cD_6vze-a1-m1-cB
20 6vyn-a3-m1-cD 78 78 0.2564 0.2564 0.2564 9.61e-05 6vyn-a3-m1-cD_6vyn-a3-m1-cF
21 6vyn-a3-m1-cF 79 78 0.2564 0.2532 0.2564 9.69e-05 6vyn-a3-m1-cD_6vyn-a3-m1-cF
22 7mbk-a1-m1-cB 82 78 0.2436 0.2317 0.2436 0.002 7mbk-a1-m1-cA_7mbk-a1-m1-cB
23 7mbk-a1-m1-cA 77 76 0.2308 0.2338 0.2368 0.025 7mbk-a1-m1-cA_7mbk-a1-m1-cB
24 3rfi-a2-m2-cA 80 33 0.1410 0.1375 0.3333 0.20 3rfi-a2-m1-cA_3rfi-a2-m2-cA
25 3rfi-a2-m1-cA 80 33 0.1410 0.1375 0.3333 0.20 3rfi-a2-m1-cA_3rfi-a2-m2-cA
26 3k9h-a1-m1-cB 229 40 0.1410 0.0480 0.2750 3.7 3k9h-a1-m1-cA_3k9h-a1-m1-cB
27 3k9h-a1-m1-cA 229 40 0.1410 0.0480 0.2750 3.7 3k9h-a1-m1-cA_3k9h-a1-m1-cB
28 3b85-a1-m3-cB 180 28 0.1538 0.0667 0.4286 4.1 3b85-a1-m3-cA_3b85-a1-m3-cB
29 2ux0-a1-m2-cC 137 42 0.2051 0.1168 0.3810 9.9 2ux0-a1-m1-cA_2ux0-a1-m2-cC
30 2ux0-a1-m1-cA 137 42 0.2051 0.1168 0.3810 9.9 2ux0-a1-m1-cA_2ux0-a1-m2-cC

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Reference:
Jacob Schwartz et al.

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