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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=65)
GFNINDRIKELGTLIPWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLR
IQELG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7f09-a2-m1-cD 65 65 1.0000 1.0000 1.0000 1.62e-41 7f09-a2-m1-cD_7f09-a2-m1-cC
2 7f09-a2-m1-cC 67 67 1.0000 0.9701 0.9701 1.48e-39 7f09-a2-m1-cD_7f09-a2-m1-cC
3 7d8s-a2-m1-cD 175 67 0.8308 0.3086 0.8060 2.70e-31 7d8s-a2-m1-cD_7d8s-a2-m1-cC
4 7d8s-a2-m1-cC 184 66 0.8308 0.2935 0.8182 3.46e-31 7d8s-a2-m1-cD_7d8s-a2-m1-cC
5 7d8r-a2-m1-cD 174 68 0.8308 0.3103 0.7941 7.90e-31 7d8r-a2-m1-cC_7d8r-a2-m1-cD
6 7d8t-a1-m1-cB 199 72 0.8308 0.2714 0.7500 4.10e-30 7d8t-a1-m1-cA_7d8t-a1-m1-cB
7 7d8t-a1-m1-cA 199 72 0.8308 0.2714 0.7500 4.10e-30 7d8t-a1-m1-cA_7d8t-a1-m1-cB
8 7d8r-a2-m1-cC 168 63 0.8154 0.3155 0.8413 6.49e-30 7d8r-a2-m1-cC_7d8r-a2-m1-cD
9 7eod-a2-m1-cC 66 68 0.8308 0.8182 0.7941 1.90e-29 7eod-a2-m1-cC_7eod-a2-m1-cD
10 6fx5-a1-m1-cB 74 71 0.8000 0.7027 0.7324 3.83e-28 6fx5-a1-m1-cA_6fx5-a1-m1-cB
11 7eod-a2-m1-cD 69 71 0.8154 0.7681 0.7465 1.16e-27 7eod-a2-m1-cC_7eod-a2-m1-cD
12 7y62-a1-m1-cB 69 67 0.7231 0.6812 0.7015 4.98e-27 7y62-a1-m1-cB_7y62-a1-m1-cA
13 7y62-a1-m1-cA 74 72 0.7231 0.6351 0.6528 3.19e-26 7y62-a1-m1-cB_7y62-a1-m1-cA
14 6fx5-a1-m1-cA 72 69 0.7692 0.6944 0.7246 3.64e-26 6fx5-a1-m1-cA_6fx5-a1-m1-cB
15 1am9-a1-m1-cD 76 44 0.2923 0.2500 0.4318 7.88e-04 1am9-a1-m1-cD_1am9-a1-m1-cC
16 1am9-a1-m1-cC 82 44 0.2923 0.2317 0.4318 0.001 1am9-a1-m1-cD_1am9-a1-m1-cC
17 7f2f-a1-m1-cB 94 48 0.2769 0.1915 0.3750 0.016 7f2f-a1-m1-cA_7f2f-a1-m1-cB
18 7f2f-a1-m1-cA 90 49 0.2769 0.2000 0.3673 0.027 7f2f-a1-m1-cA_7f2f-a1-m1-cB
19 2d52-a1-m1-cB 394 35 0.1846 0.0305 0.3429 1.1 2d52-a1-m1-cB_2d52-a1-m1-cA
20 2d52-a1-m1-cA 404 35 0.1846 0.0297 0.3429 1.1 2d52-a1-m1-cB_2d52-a1-m1-cA
21 5tby-a1-m1-cA 954 30 0.2000 0.0136 0.4333 4.0 5tby-a1-m1-cB_5tby-a1-m1-cA
22 5tby-a1-m1-cB 950 30 0.2000 0.0137 0.4333 4.1 5tby-a1-m1-cB_5tby-a1-m1-cA
23 3dtv-a5-m2-cB 233 26 0.1385 0.0386 0.3462 4.2 3dtv-a5-m2-cB_3dtv-a5-m3-cD, 3dtv-a5-m4-cC_3dtv-a5-m2-cB
24 3dtv-a5-m3-cD 235 26 0.1385 0.0383 0.3462 4.2 3dtv-a5-m2-cB_3dtv-a5-m3-cD, 3dtv-a5-m4-cC_3dtv-a5-m3-cD
25 4ydh-a1-m1-cC 328 52 0.2308 0.0457 0.2885 7.9 4ydh-a1-m1-cC_4ydh-a1-m1-cA
26 4ydh-a1-m1-cA 330 52 0.2308 0.0455 0.2885 8.3 4ydh-a1-m1-cC_4ydh-a1-m1-cA
27 1an4-a1-m1-cB 65 46 0.2308 0.2308 0.3261 8.4 1an4-a1-m1-cA_1an4-a1-m1-cB
28 1an4-a1-m1-cA 65 46 0.2308 0.2308 0.3261 8.4 1an4-a1-m1-cA_1an4-a1-m1-cB
29 5wj7-a1-m1-cB 196 27 0.1692 0.0561 0.4074 9.3 5wj7-a1-m1-cA_5wj7-a1-m1-cB
30 5i4z-a1-m1-cB 74 38 0.2154 0.1892 0.3684 9.8 5i4z-a1-m1-cA_5i4z-a1-m1-cB
31 5i4z-a1-m1-cA 74 38 0.2154 0.1892 0.3684 9.8 5i4z-a1-m1-cA_5i4z-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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