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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=91)
GFVNKDQIAKDVKQFYDQALQQAVVDDDANNAKAVVKTFHETLDCCGSSTLTALTTSVLK
NNLCPSGSNIISNLFKEDCHQKIDDLFSGKG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5m3d-a2-m1-cB 91 91 1.0000 1.0000 1.0000 1.20e-62 5m3d-a2-m1-cC_5m3d-a2-m1-cB
2 5m3d-a2-m1-cC 89 89 0.9780 1.0000 1.0000 8.38e-61 5m3d-a2-m1-cC_5m3d-a2-m1-cB
3 5dfw-a1-m2-cA 90 89 0.9780 0.9889 1.0000 1.14e-60 5dfw-a1-m1-cA_5dfw-a1-m2-cA
4 5dfw-a1-m1-cA 90 89 0.9780 0.9889 1.0000 1.14e-60 5dfw-a1-m1-cA_5dfw-a1-m2-cA
5 3x0g-a1-m2-cA 93 89 0.9231 0.9032 0.9438 2.25e-57 3x0g-a1-m1-cA_3x0g-a1-m2-cA
6 3x0g-a1-m1-cA 93 89 0.9231 0.9032 0.9438 2.25e-57 3x0g-a1-m1-cA_3x0g-a1-m2-cA
7 6rlr-a1-m1-cB 79 84 0.2088 0.2405 0.2262 0.011 6rlr-a1-m1-cB_6rlr-a1-m1-cA
8 6rlr-a1-m1-cD 80 84 0.2088 0.2375 0.2262 0.011 6rlr-a1-m1-cA_6rlr-a1-m1-cD
9 6rlr-a1-m1-cA 80 84 0.2088 0.2375 0.2262 0.011 6rlr-a1-m1-cA_6rlr-a1-m1-cD, 6rlr-a1-m1-cB_6rlr-a1-m1-cA
10 5a8w-a2-m1-cK 442 62 0.2308 0.0475 0.3387 1.7 5a8w-a2-m1-cH_5a8w-a2-m1-cK
11 5a8w-a2-m1-cH 442 62 0.2308 0.0475 0.3387 1.7 5a8w-a2-m1-cH_5a8w-a2-m1-cK
12 6z5l-a1-m9-cA 251 42 0.1648 0.0598 0.3571 2.6 6z5l-a1-m11-cA_6z5l-a1-m9-cA
13 6z5l-a1-m11-cA 251 42 0.1648 0.0598 0.3571 2.6 6z5l-a1-m11-cA_6z5l-a1-m9-cA
14 7jm3-a1-m9-cC 251 42 0.1648 0.0598 0.3571 2.7 7jm3-a1-m1-cC_7jm3-a1-m9-cC
15 7jm3-a1-m1-cC 251 42 0.1648 0.0598 0.3571 2.7 7jm3-a1-m1-cC_7jm3-a1-m9-cC
16 5v7b-a1-m1-cA 159 42 0.1648 0.0943 0.3571 3.2 5v7b-a1-m1-cB_5v7b-a1-m1-cA
17 5v7b-a1-m1-cB 156 42 0.1648 0.0962 0.3571 3.6 5v7b-a1-m1-cB_5v7b-a1-m1-cA
18 8epz-a1-m1-cB 567 65 0.2198 0.0353 0.3077 3.7 8epz-a1-m1-cB_8epz-a1-m1-cA
19 8epz-a1-m1-cA 568 65 0.2198 0.0352 0.3077 3.7 8epz-a1-m1-cB_8epz-a1-m1-cA
20 7aio-a1-m1-cA 909 37 0.1319 0.0132 0.3243 6.9 7aio-a1-m1-cA_7aio-a1-m1-cB
21 7aio-a1-m1-cB 910 37 0.1319 0.0132 0.3243 6.9 7aio-a1-m1-cA_7aio-a1-m1-cB
22 1a81-a1-m1-cI 254 46 0.1429 0.0512 0.2826 7.5 1a81-a1-m1-cK_1a81-a1-m1-cI
23 3o4f-a4-m1-cG 279 89 0.2747 0.0896 0.2809 9.6 3o4f-a4-m1-cH_3o4f-a4-m1-cG

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Reference:
Jacob Schwartz et al.

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