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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=71)
GGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGML
ASQQNQSGPSG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7q3u-a1-m1-cC 71 71 1.0000 1.0000 1.0000 2.72e-40 7q3u-a1-m1-cA_7q3u-a1-m1-cC
2 7q3u-a1-m1-cA 71 71 1.0000 1.0000 1.0000 2.72e-40 7q3u-a1-m1-cA_7q3u-a1-m1-cC
3 7py2-a1-m1-cD 79 70 0.9859 0.8861 1.0000 1.08e-39 7py2-a1-m1-cC_7py2-a1-m1-cD
4 7py2-a1-m1-cC 79 70 0.9859 0.8861 1.0000 1.08e-39 7py2-a1-m1-cC_7py2-a1-m1-cD
5 7kwz-a1-m1-cE 139 71 1.0000 0.5108 1.0000 1.68e-39 7kwz-a1-m1-cD_7kwz-a1-m1-cE
6 7kwz-a1-m1-cD 139 71 1.0000 0.5108 1.0000 1.68e-39 7kwz-a1-m1-cD_7kwz-a1-m1-cE
7 6n3a-a1-m1-cJ 50 41 0.5775 0.8200 1.0000 1.24e-14 6n3a-a1-m1-cE_6n3a-a1-m1-cJ, 6n3a-a1-m1-cI_6n3a-a1-m1-cJ
8 6n3a-a1-m1-cI 50 41 0.5775 0.8200 1.0000 1.24e-14 6n3a-a1-m1-cI_6n3a-a1-m1-cJ
9 6n3a-a1-m1-cE 50 41 0.5775 0.8200 1.0000 1.24e-14 6n3a-a1-m1-cE_6n3a-a1-m1-cJ
10 6n3b-a1-m1-cJ 41 40 0.5634 0.9756 1.0000 4.13e-14 6n3b-a1-m1-cB_6n3b-a1-m1-cJ
11 6n3b-a1-m1-cB 41 40 0.5634 0.9756 1.0000 4.13e-14 6n3b-a1-m1-cB_6n3b-a1-m1-cJ
12 6n3c-a1-m1-cT 32 32 0.4366 0.9688 0.9688 9.39e-13 6n3c-a1-m1-cP_6n3c-a1-m1-cT, 6n3c-a1-m1-cS_6n3c-a1-m1-cT
13 6n3c-a1-m1-cS 32 32 0.4366 0.9688 0.9688 9.39e-13 6n3c-a1-m1-cO_6n3c-a1-m1-cS, 6n3c-a1-m1-cQ_6n3c-a1-m1-cS, 6n3c-a1-m1-cS_6n3c-a1-m1-cT
14 6n3c-a1-m1-cQ 32 32 0.4366 0.9688 0.9688 9.39e-13 6n3c-a1-m1-cQ_6n3c-a1-m1-cS
15 6n3c-a1-m1-cP 32 32 0.4366 0.9688 0.9688 9.39e-13 6n3c-a1-m1-cP_6n3c-a1-m1-cT
16 6n3c-a1-m1-cO 32 32 0.4366 0.9688 0.9688 9.39e-13 6n3c-a1-m1-cO_6n3c-a1-m1-cS
17 6n3b-a1-m1-cI 36 36 0.5070 1.0000 1.0000 1.97e-11 6n3b-a1-m1-cA_6n3b-a1-m1-cI
18 6n3b-a1-m1-cA 36 36 0.5070 1.0000 1.0000 1.97e-11 6n3b-a1-m1-cA_6n3b-a1-m1-cI
19 6n37-a1-m1-cJ 36 36 0.5070 1.0000 1.0000 2.56e-11 6n37-a1-m1-cF_6n37-a1-m1-cJ, 6n37-a1-m1-cH_6n37-a1-m1-cJ
20 6n37-a1-m1-cH 36 36 0.5070 1.0000 1.0000 2.56e-11 6n37-a1-m1-cH_6n37-a1-m1-cJ
21 6n37-a1-m1-cF 36 36 0.5070 1.0000 1.0000 2.56e-11 6n37-a1-m1-cF_6n37-a1-m1-cJ
22 5u1j-a4-m1-cD 291 39 0.1690 0.0412 0.3077 2.6 5u1j-a4-m1-cA_5u1j-a4-m1-cD
23 5a0u-a5-m2-cE 793 24 0.1408 0.0126 0.4167 2.7 5a0u-a5-m1-cF_5a0u-a5-m2-cE
24 5a0u-a5-m1-cF 793 24 0.1408 0.0126 0.4167 2.7 5a0u-a5-m1-cF_5a0u-a5-m2-cE
25 3men-a2-m1-cC 337 30 0.1831 0.0386 0.4333 7.8 3men-a2-m1-cC_3men-a2-m1-cD
26 3men-a2-m1-cD 339 30 0.1831 0.0383 0.4333 8.4 3men-a2-m1-cC_3men-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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