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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=34)
GGIAQIIAAQEEMLRKERELEEARKKLAQIRQQQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2qdq-a1-m1-cA 34 34 1.0000 1.0000 1.0000 8.85e-16 2qdq-a1-m1-cB_2qdq-a1-m1-cA
2 2qdq-a1-m1-cB 33 33 0.9706 1.0000 1.0000 8.20e-15 2qdq-a1-m1-cB_2qdq-a1-m1-cA
3 3npk-a1-m1-cB 256 31 0.3824 0.0508 0.4194 3.2 3npk-a1-m1-cB_3npk-a1-m1-cA
4 3npk-a1-m1-cA 260 31 0.3824 0.0500 0.4194 3.2 3npk-a1-m1-cB_3npk-a1-m1-cA
5 5wx8-a2-m1-cD 160 26 0.3235 0.0688 0.4231 6.4 5wx8-a2-m1-cC_5wx8-a2-m1-cD
6 5wx8-a2-m1-cC 160 26 0.3235 0.0688 0.4231 6.4 5wx8-a2-m1-cC_5wx8-a2-m1-cD
7 4fsc-a2-m1-cB 264 24 0.3529 0.0455 0.5000 7.8 4fsc-a2-m1-cB_4fsc-a2-m1-cC
8 4fsc-a2-m1-cC 266 24 0.3529 0.0451 0.5000 7.8 4fsc-a2-m1-cB_4fsc-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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