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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
GGNIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKAKRVMVN
RLETILLSGNNVAMLVPGGD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3pgg-a1-m3-cB 80 80 1.0000 1.0000 1.0000 5.01e-53 3pgg-a1-m3-cA_3pgg-a1-m3-cB
2 3pgg-a1-m3-cA 78 78 0.9625 0.9872 0.9872 6.45e-49 3pgg-a1-m3-cA_3pgg-a1-m3-cB
3 1th7-a1-m1-cN 78 68 0.2750 0.2821 0.3235 1.41e-07 1th7-a1-m1-cF_1th7-a1-m1-cN, 1th7-a1-m1-cH_1th7-a1-m1-cN
4 1th7-a1-m1-cH 78 68 0.2750 0.2821 0.3235 1.41e-07 1th7-a1-m1-cH_1th7-a1-m1-cN
5 1th7-a1-m1-cF 78 68 0.2750 0.2821 0.3235 1.41e-07 1th7-a1-m1-cF_1th7-a1-m1-cN
6 4n0a-a1-m2-cF 75 69 0.2375 0.2533 0.2754 4.34e-07 4n0a-a1-m2-cE_4n0a-a1-m2-cF
7 1ljo-a1-m6-cA 75 77 0.3375 0.3600 0.3506 6.84e-07 1ljo-a1-m2-cA_1ljo-a1-m6-cA
8 1ljo-a1-m2-cA 75 77 0.3375 0.3600 0.3506 6.84e-07 1ljo-a1-m2-cA_1ljo-a1-m6-cA
9 4n0a-a1-m2-cE 68 69 0.2375 0.2794 0.2754 2.08e-05 4n0a-a1-m2-cE_4n0a-a1-m2-cF
10 3bw1-a1-m4-cB 86 73 0.2375 0.2209 0.2603 2.98e-05 3bw1-a1-m4-cA_3bw1-a1-m4-cB
11 3bw1-a1-m4-cA 86 73 0.2375 0.2209 0.2603 2.98e-05 3bw1-a1-m4-cA_3bw1-a1-m4-cB
12 4n0a-a1-m2-cB 80 73 0.2375 0.2375 0.2603 2.99e-05 4n0a-a1-m1-cA_4n0a-a1-m2-cB
13 4n0a-a1-m1-cA 80 73 0.2375 0.2375 0.2603 2.99e-05 4n0a-a1-m1-cA_4n0a-a1-m2-cB
14 4emg-a2-m1-cN 69 71 0.2500 0.2899 0.2817 1.57e-04 4emg-a2-m1-cK_4emg-a2-m1-cN
15 4emg-a2-m1-cK 69 71 0.2500 0.2899 0.2817 1.57e-04 4emg-a2-m1-cK_4emg-a2-m1-cN
16 2eth-a2-m2-cB 135 48 0.1750 0.1037 0.2917 7.7 2eth-a2-m1-cA_2eth-a2-m2-cB, 2eth-a2-m2-cA_2eth-a2-m2-cB
17 2eth-a2-m2-cA 135 48 0.1750 0.1037 0.2917 7.7 2eth-a2-m1-cA_2eth-a2-m2-cA, 2eth-a2-m2-cA_2eth-a2-m2-cB
18 2eth-a2-m1-cA 135 48 0.1750 0.1037 0.2917 7.7 2eth-a2-m1-cA_2eth-a2-m2-cA, 2eth-a2-m1-cA_2eth-a2-m2-cB

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Reference:
Jacob Schwartz et al.

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