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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=70)
GHAEKARDSEDRRQFITDASHELRTPLTTIRGFAELYRQGAARDVGLLSRIESEASRGLL
VDDLLLLAKL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5ukv-a1-m1-cB 70 70 1.0000 1.0000 1.0000 1.86e-44 5ukv-a1-m1-cA_5ukv-a1-m1-cB
2 5ukv-a1-m1-cA 70 70 1.0000 1.0000 1.0000 1.86e-44 5ukv-a1-m1-cA_5ukv-a1-m1-cB
3 4u7o-a1-m1-cA 234 72 0.3714 0.1111 0.3611 3.13e-09 4u7o-a1-m1-cB_4u7o-a1-m1-cA
4 4u7o-a1-m1-cB 218 60 0.3286 0.1055 0.3833 2.66e-06 4u7o-a1-m1-cB_4u7o-a1-m1-cA
5 4u7n-a1-m1-cA 211 60 0.3000 0.0995 0.3500 3.24e-05 4u7n-a1-m1-cA_4u7n-a1-m1-cB
6 4u7n-a1-m1-cB 212 60 0.3000 0.0991 0.3500 3.25e-05 4u7n-a1-m1-cA_4u7n-a1-m1-cB
7 4q20-a1-m1-cB 225 25 0.2143 0.0667 0.6000 1.56e-04 4q20-a1-m1-cB_4q20-a1-m1-cA
8 4q20-a1-m1-cA 231 25 0.2143 0.0649 0.6000 1.70e-04 4q20-a1-m1-cB_4q20-a1-m1-cA
9 4biy-a2-m1-cD 216 61 0.3571 0.1157 0.4098 2.07e-04 4biy-a2-m1-cD_4biy-a2-m1-cC
10 4biy-a1-m1-cB 221 61 0.3571 0.1131 0.4098 2.33e-04 4biy-a1-m1-cB_4biy-a1-m1-cA
11 4biy-a2-m1-cC 228 61 0.3571 0.1096 0.4098 2.52e-04 4biy-a2-m1-cD_4biy-a2-m1-cC
12 4biy-a1-m1-cA 228 61 0.3571 0.1096 0.4098 2.52e-04 4biy-a1-m1-cB_4biy-a1-m1-cA
13 4biu-a3-m1-cE 237 61 0.3571 0.1055 0.4098 2.57e-04 4biu-a3-m1-cE_4biu-a3-m1-cF
14 5lfk-a1-m2-cA 243 61 0.3571 0.1029 0.4098 2.69e-04 5lfk-a1-m1-cA_5lfk-a1-m2-cA, 5lfk-a1-m2-cB_5lfk-a1-m2-cA
15 5lfk-a1-m1-cA 243 61 0.3571 0.1029 0.4098 2.69e-04 5lfk-a1-m1-cA_5lfk-a1-m2-cA, 5lfk-a1-m2-cB_5lfk-a1-m1-cA
16 4biu-a3-m1-cF 250 61 0.3571 0.1000 0.4098 2.78e-04 4biu-a3-m1-cE_4biu-a3-m1-cF
17 4i5s-a1-m1-cB 395 60 0.3000 0.0532 0.3500 0.002 4i5s-a1-m1-cA_4i5s-a1-m1-cB
18 6paj-a1-m1-cA 199 24 0.1571 0.0553 0.4583 0.002 6paj-a1-m1-cA_6paj-a1-m1-cB
19 6paj-a1-m1-cB 203 24 0.1571 0.0542 0.4583 0.002 6paj-a1-m1-cA_6paj-a1-m1-cB
20 4i5s-a1-m1-cA 380 59 0.3000 0.0553 0.3559 0.003 4i5s-a1-m1-cA_4i5s-a1-m1-cB
21 4biz-a2-m1-cD 214 61 0.3429 0.1121 0.3934 0.003 4biz-a2-m1-cD_4biz-a2-m1-cC
22 4biz-a2-m1-cC 239 61 0.3429 0.1004 0.3934 0.004 4biz-a2-m1-cD_4biz-a2-m1-cC
23 4kp4-a1-m1-cB 217 27 0.2000 0.0645 0.5185 0.007 4kp4-a1-m1-cB_4kp4-a1-m1-cA
24 4kp4-a1-m1-cA 219 27 0.2000 0.0639 0.5185 0.007 4kp4-a1-m1-cB_4kp4-a1-m1-cA
25 7z8n-a1-m1-cD 286 62 0.2714 0.0664 0.3065 0.065 7z8n-a1-m1-cA_7z8n-a1-m1-cD, 7z8n-a1-m1-cB_7z8n-a1-m1-cD, 7z8n-a1-m1-cC_7z8n-a1-m1-cD
26 7z8n-a1-m1-cC 286 62 0.2714 0.0664 0.3065 0.065 7z8n-a1-m1-cC_7z8n-a1-m1-cD
27 7z8n-a1-m1-cB 286 62 0.2714 0.0664 0.3065 0.065 7z8n-a1-m1-cB_7z8n-a1-m1-cD
28 7z8n-a1-m1-cA 286 62 0.2714 0.0664 0.3065 0.065 7z8n-a1-m1-cA_7z8n-a1-m1-cD
29 1joy-a1-m1-cB 67 28 0.1857 0.1940 0.4643 0.12 1joy-a1-m1-cA_1joy-a1-m1-cB
30 1joy-a1-m1-cA 67 28 0.1857 0.1940 0.4643 0.12 1joy-a1-m1-cA_1joy-a1-m1-cB
31 3zrw-a1-m1-cB 110 33 0.1857 0.1182 0.3939 0.27 3zrw-a1-m1-cB_3zrw-a1-m1-cA
32 2lfr-a1-m1-cB 111 31 0.1857 0.1171 0.4194 0.27 2lfr-a1-m1-cA_2lfr-a1-m1-cB
33 2lfr-a1-m1-cA 111 31 0.1857 0.1171 0.4194 0.27 2lfr-a1-m1-cA_2lfr-a1-m1-cB
34 3zrw-a1-m1-cA 111 31 0.1857 0.1171 0.4194 0.28 3zrw-a1-m1-cB_3zrw-a1-m1-cA
35 2lfs-a1-m1-cB 111 31 0.1857 0.1171 0.4194 0.33 2lfs-a1-m1-cA_2lfs-a1-m1-cB
36 2lfs-a1-m1-cA 111 31 0.1857 0.1171 0.4194 0.33 2lfs-a1-m1-cA_2lfs-a1-m1-cB
37 6dk7-a4-m1-cG 225 23 0.1429 0.0444 0.4348 0.36 6dk7-a4-m1-cG_6dk7-a4-m1-cH
38 6dk7-a4-m1-cH 225 23 0.1429 0.0444 0.4348 0.36 6dk7-a4-m1-cG_6dk7-a4-m1-cH
39 7ltq-a2-m1-cB 248 62 0.3000 0.0847 0.3387 0.38 7ltq-a2-m1-cB_7ltq-a2-m1-cD
40 7ltq-a2-m1-cD 249 62 0.3000 0.0843 0.3387 0.39 7ltq-a2-m1-cB_7ltq-a2-m1-cD
41 3d36-a1-m1-cA 217 20 0.1571 0.0507 0.5500 0.41 3d36-a1-m1-cA_3d36-a1-m1-cB
42 3d36-a1-m1-cB 221 27 0.1571 0.0498 0.4074 0.43 3d36-a1-m1-cA_3d36-a1-m1-cB
43 7zp0-a2-m1-cD 217 59 0.2714 0.0876 0.3220 0.74 7zp0-a2-m1-cC_7zp0-a2-m1-cD
44 7zp0-a2-m1-cC 217 59 0.2714 0.0876 0.3220 0.74 7zp0-a2-m1-cC_7zp0-a2-m1-cD
45 3zcc-a1-m1-cB 110 21 0.1571 0.1000 0.5238 3.3 3zcc-a1-m1-cA_3zcc-a1-m1-cB
46 3zcc-a1-m1-cA 110 21 0.1571 0.1000 0.5238 3.3 3zcc-a1-m1-cA_3zcc-a1-m1-cB
47 2dou-a1-m1-cB 368 52 0.2714 0.0516 0.3654 5.0 2dou-a1-m1-cB_2dou-a1-m1-cA
48 2dou-a1-m1-cA 372 52 0.2714 0.0511 0.3654 5.0 2dou-a1-m1-cB_2dou-a1-m1-cA
49 7wb4-a1-m1-cp 995 49 0.2143 0.0151 0.3061 5.2 7wb4-a1-m1-cp_7wb4-a1-m1-cP
50 6qrj-a1-m2-cA 463 17 0.1429 0.0216 0.5882 5.5 6qrj-a1-m1-cA_6qrj-a1-m2-cA
51 6qrj-a1-m1-cA 463 17 0.1429 0.0216 0.5882 5.5 6qrj-a1-m1-cA_6qrj-a1-m2-cA
52 7wb4-a1-m1-cP 1021 49 0.2143 0.0147 0.3061 5.5 7wb4-a1-m1-cp_7wb4-a1-m1-cP
53 7vop-a1-m1-cI 1076 49 0.2143 0.0139 0.3061 5.5 7vop-a1-m1-cI_7vop-a1-m1-cR
54 7vci-a1-m1-cI 1076 49 0.2143 0.0139 0.3061 5.5 7vci-a1-m1-cI_7vci-a1-m1-cR
55 7vop-a1-m1-cR 1082 49 0.2143 0.0139 0.3061 5.8 7vop-a1-m1-cI_7vop-a1-m1-cR
56 7vci-a1-m1-cR 1082 49 0.2143 0.0139 0.3061 5.8 7vci-a1-m1-cI_7vci-a1-m1-cR
57 7cch-a1-m2-cA 197 13 0.1143 0.0406 0.6154 6.6 7cch-a1-m1-cA_7cch-a1-m2-cA
58 7cch-a1-m1-cA 197 13 0.1143 0.0406 0.6154 6.6 7cch-a1-m1-cA_7cch-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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