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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
GHMAVVYAARCKFGNPLVQNNRITRAVCDLTNEHTTKDGSWHYVEVDNECKYLAGDNPRD
QPGWAVFVKYCTYYKGVPD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6qpk-a1-m1-cB 79 79 1.0000 1.0000 1.0000 7.20e-57 6qpk-a1-m1-cA_6qpk-a1-m1-cB
2 6qpk-a1-m1-cA 77 78 0.9620 0.9870 0.9744 1.89e-52 6qpk-a1-m1-cA_6qpk-a1-m1-cB
3 1siq-a1-m4-cA 390 35 0.1772 0.0359 0.4000 3.1 1siq-a1-m1-cA_1siq-a1-m4-cA, 1siq-a1-m2-cA_1siq-a1-m4-cA, 1siq-a1-m3-cA_1siq-a1-m4-cA
4 1siq-a1-m3-cA 390 35 0.1772 0.0359 0.4000 3.1 1siq-a1-m3-cA_1siq-a1-m4-cA
5 1siq-a1-m2-cA 390 35 0.1772 0.0359 0.4000 3.1 1siq-a1-m2-cA_1siq-a1-m4-cA
6 1siq-a1-m1-cA 390 35 0.1772 0.0359 0.4000 3.1 1siq-a1-m1-cA_1siq-a1-m4-cA
7 3d6b-a1-m1-cD 372 35 0.1646 0.0349 0.3714 7.9 3d6b-a1-m1-cB_3d6b-a1-m1-cD
8 3d6b-a1-m1-cA 374 35 0.1646 0.0348 0.3714 7.9 3d6b-a1-m1-cB_3d6b-a1-m1-cA
9 1a4e-a1-m1-cD 488 63 0.2025 0.0328 0.2540 8.3 1a4e-a1-m1-cA_1a4e-a1-m1-cD, 1a4e-a1-m1-cB_1a4e-a1-m1-cD, 1a4e-a1-m1-cC_1a4e-a1-m1-cD
10 1a4e-a1-m1-cC 488 63 0.2025 0.0328 0.2540 8.3 1a4e-a1-m1-cC_1a4e-a1-m1-cD
11 1a4e-a1-m1-cB 488 63 0.2025 0.0328 0.2540 8.3 1a4e-a1-m1-cB_1a4e-a1-m1-cD
12 1a4e-a1-m1-cA 488 63 0.2025 0.0328 0.2540 8.3 1a4e-a1-m1-cA_1a4e-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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