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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
GHMDELFEEHLEIAKALFAQRLPYWCDVFLRPADQAFNAYLNARGQASTYLVLEGFDPVY
VPRGCDLDAVRATARARARLREAGLGEDALPVLL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6tcb-a1-m1-cB 94 94 1.0000 1.0000 1.0000 5.07e-65 6tcb-a1-m1-cA_6tcb-a1-m1-cB
2 6tcb-a1-m1-cA 94 94 1.0000 1.0000 1.0000 5.07e-65 6tcb-a1-m1-cA_6tcb-a1-m1-cB
3 6oml-a1-m1-cY 105 29 0.1064 0.0952 0.3448 3.0 6oml-a1-m1-cY_6oml-a1-m1-cX
4 6oml-a1-m1-cX 105 29 0.1064 0.0952 0.3448 3.0 6oml-a1-m1-cY_6oml-a1-m1-cX
5 2qcw-a1-m1-cB 104 29 0.1064 0.0962 0.3448 3.0 2qcw-a1-m1-cA_2qcw-a1-m1-cB
6 2qcw-a1-m1-cA 104 29 0.1064 0.0962 0.3448 3.0 2qcw-a1-m1-cA_2qcw-a1-m1-cB
7 7bbs-a1-m1-cB 451 82 0.2021 0.0421 0.2317 3.2 7bbs-a1-m1-cB_7bbs-a1-m1-cA
8 7bbs-a1-m1-cA 452 82 0.2021 0.0420 0.2317 3.2 7bbs-a1-m1-cB_7bbs-a1-m1-cA
9 6az0-a1-m1-cC 439 31 0.1383 0.0296 0.4194 4.1 6az0-a1-m1-cB_6az0-a1-m1-cC
10 6az0-a1-m1-cB 439 31 0.1383 0.0296 0.4194 4.1 6az0-a1-m1-cB_6az0-a1-m1-cC
11 1qmo-a1-m1-cH 117 29 0.1064 0.0855 0.3448 7.3 1qmo-a1-m1-cF_1qmo-a1-m1-cH
12 1qmo-a1-m1-cF 117 29 0.1064 0.0855 0.3448 7.3 1qmo-a1-m1-cF_1qmo-a1-m1-cH
13 5zmm-a1-m1-cC 522 69 0.2021 0.0364 0.2754 8.1 5zmm-a1-m1-cD_5zmm-a1-m1-cC, 5zmm-a1-m1-cE_5zmm-a1-m1-cC
14 4fr5-a3-m2-cB 263 26 0.1277 0.0456 0.4615 8.4 4fr5-a3-m1-cA_4fr5-a3-m2-cB
15 4fr5-a3-m1-cA 263 26 0.1277 0.0456 0.4615 8.4 4fr5-a3-m1-cA_4fr5-a3-m2-cB
16 2xcq-a1-m2-cA 652 59 0.1809 0.0261 0.2881 8.5 2xcq-a1-m1-cA_2xcq-a1-m2-cA
17 2xcq-a1-m1-cA 652 59 0.1809 0.0261 0.2881 8.5 2xcq-a1-m1-cA_2xcq-a1-m2-cA
18 3oe8-a2-m1-cB 426 23 0.0957 0.0211 0.3913 9.7 3oe8-a2-m1-cB_3oe8-a2-m1-cA, 3oe8-a2-m1-cB_3oe8-a2-m1-cC
19 3oe8-a2-m1-cC 428 23 0.0957 0.0210 0.3913 9.7 3oe8-a2-m1-cB_3oe8-a2-m1-cC
20 3oe8-a2-m1-cA 433 23 0.0957 0.0208 0.3913 9.8 3oe8-a2-m1-cB_3oe8-a2-m1-cA
21 3oe0-a1-m2-cA 433 23 0.0957 0.0208 0.3913 9.8 3oe0-a1-m1-cA_3oe0-a1-m2-cA
22 3oe0-a1-m1-cA 433 23 0.0957 0.0208 0.3913 9.8 3oe0-a1-m1-cA_3oe0-a1-m2-cA
23 3odu-a1-m1-cB 456 23 0.0957 0.0197 0.3913 9.8 3odu-a1-m1-cB_3odu-a1-m1-cA
24 3odu-a1-m1-cA 466 23 0.0957 0.0193 0.3913 9.8 3odu-a1-m1-cB_3odu-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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