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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
GHMSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERA
ARDGRNPSTGETIKIPASKSAKFKAGKQLKTDLNN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5l8z-a1-m2-cA 95 95 1.0000 1.0000 1.0000 8.56e-65 5l8z-a1-m1-cA_5l8z-a1-m2-cA
2 5l8z-a1-m1-cA 95 95 1.0000 1.0000 1.0000 8.56e-65 5l8z-a1-m1-cA_5l8z-a1-m2-cA
3 1hue-a1-m1-cB 90 88 0.4947 0.5222 0.5341 5.76e-22 1hue-a1-m1-cA_1hue-a1-m1-cB
4 1hue-a1-m1-cA 90 88 0.4947 0.5222 0.5341 5.76e-22 1hue-a1-m1-cA_1hue-a1-m1-cB
5 4qjn-a2-m1-cD 90 88 0.4526 0.4778 0.4886 3.70e-20 4qjn-a2-m1-cB_4qjn-a2-m1-cD
6 4qjn-a2-m1-cB 90 88 0.4526 0.4778 0.4886 3.70e-20 4qjn-a2-m1-cB_4qjn-a2-m1-cD
7 3rhi-a2-m1-cC 90 88 0.4316 0.4556 0.4659 5.13e-19 3rhi-a2-m1-cD_3rhi-a2-m1-cC
8 5lvt-a2-m1-cD 91 87 0.4105 0.4286 0.4483 8.18e-16 5lvt-a2-m1-cB_5lvt-a2-m1-cD
9 5lvt-a2-m1-cB 91 87 0.4105 0.4286 0.4483 8.18e-16 5lvt-a2-m1-cB_5lvt-a2-m1-cD
10 1p71-a1-m1-cB 93 88 0.3579 0.3656 0.3864 5.35e-15 1p71-a1-m1-cB_1p71-a1-m1-cA
11 1p71-a1-m1-cA 94 88 0.3579 0.3617 0.3864 5.54e-15 1p71-a1-m1-cB_1p71-a1-m1-cA
12 6o8q-a1-m1-cH 91 88 0.4105 0.4286 0.4432 1.15e-13 6o8q-a1-m1-cG_6o8q-a1-m1-cH
13 6o8q-a1-m1-cG 91 88 0.4105 0.4286 0.4432 1.15e-13 6o8q-a1-m1-cG_6o8q-a1-m1-cH
14 6n2l-a1-m2-cA 88 93 0.4000 0.4318 0.4086 5.24e-12 6n2l-a1-m1-cA_6n2l-a1-m2-cA
15 6n2l-a1-m1-cA 88 93 0.4000 0.4318 0.4086 5.24e-12 6n2l-a1-m1-cA_6n2l-a1-m2-cA
16 3rhi-a2-m1-cD 82 94 0.4000 0.4634 0.4043 1.81e-09 3rhi-a2-m1-cD_3rhi-a2-m1-cC
17 5fbm-a1-m1-cB 83 87 0.3789 0.4337 0.4138 1.89e-09 5fbm-a1-m1-cA_5fbm-a1-m1-cB
18 5fbm-a1-m1-cA 83 87 0.3684 0.4217 0.4023 9.76e-09 5fbm-a1-m1-cA_5fbm-a1-m1-cB
19 1huu-a4-m3-cB 74 88 0.3895 0.5000 0.4205 1.18e-08 1huu-a4-m1-cB_1huu-a4-m3-cB
20 1huu-a4-m1-cB 74 88 0.3895 0.5000 0.4205 1.18e-08 1huu-a4-m1-cB_1huu-a4-m3-cB
21 2np2-a1-m1-cB 102 92 0.2947 0.2745 0.3043 3.69e-08 2np2-a1-m1-cA_2np2-a1-m1-cB
22 2np2-a1-m1-cA 102 92 0.2947 0.2745 0.3043 3.69e-08 2np2-a1-m1-cA_2np2-a1-m1-cB
23 4dky-a1-m2-cA 97 88 0.3474 0.3402 0.3750 4.72e-07 4dky-a1-m1-cA_4dky-a1-m2-cA
24 4dky-a1-m1-cA 97 88 0.3474 0.3402 0.3750 4.72e-07 4dky-a1-m1-cA_4dky-a1-m2-cA
25 5eka-a1-m2-cA 85 88 0.2842 0.3176 0.3068 6.89e-05 5eka-a1-m1-cA_5eka-a1-m2-cA
26 5eka-a1-m1-cA 85 88 0.2842 0.3176 0.3068 6.89e-05 5eka-a1-m1-cA_5eka-a1-m2-cA
27 6lmj-a1-m1-cB 98 65 0.2737 0.2653 0.4000 9.38e-05 6lmj-a1-m1-cB_6lmj-a1-m1-cA
28 6lmj-a1-m1-cA 99 65 0.2737 0.2626 0.4000 1.02e-04 6lmj-a1-m1-cB_6lmj-a1-m1-cA
29 4p3v-a1-m2-cA 72 92 0.3053 0.4028 0.3152 2.83e-04 4p3v-a1-m1-cA_4p3v-a1-m2-cA
30 4p3v-a1-m1-cA 72 92 0.3053 0.4028 0.3152 2.83e-04 4p3v-a1-m1-cA_4p3v-a1-m2-cA
31 2ndp-a1-m1-cB 99 52 0.2105 0.2020 0.3846 7.16e-04 2ndp-a1-m1-cA_2ndp-a1-m1-cB
32 2ndp-a1-m1-cA 99 52 0.2105 0.2020 0.3846 7.16e-04 2ndp-a1-m1-cA_2ndp-a1-m1-cB
33 1wtu-a1-m1-cB 99 92 0.3474 0.3333 0.3587 7.47e-04 1wtu-a1-m1-cA_1wtu-a1-m1-cB
34 1wtu-a1-m1-cA 99 92 0.3474 0.3333 0.3587 7.47e-04 1wtu-a1-m1-cA_1wtu-a1-m1-cB
35 1exe-a1-m1-cB 99 92 0.3474 0.3333 0.3587 0.002 1exe-a1-m1-cA_1exe-a1-m1-cB
36 1exe-a1-m1-cA 99 92 0.3474 0.3333 0.3587 0.002 1exe-a1-m1-cA_1exe-a1-m1-cB
37 4odi-a1-m1-cD 232 40 0.1579 0.0647 0.3750 0.14 4odi-a1-m1-cD_4odi-a1-m1-cB, 4odi-a1-m1-cD_4odi-a1-m1-cC
38 4odi-a1-m1-cC 243 40 0.1579 0.0617 0.3750 0.15 4odi-a1-m1-cD_4odi-a1-m1-cC
39 4odi-a1-m1-cB 245 40 0.1579 0.0612 0.3750 0.15 4odi-a1-m1-cD_4odi-a1-m1-cB
40 5zf6-a1-m1-cA 560 62 0.2421 0.0411 0.3710 0.39 5zf6-a1-m1-cB_5zf6-a1-m1-cA
41 3u1k-a1-m3-cA 619 62 0.2421 0.0372 0.3710 0.39 3u1k-a1-m2-cA_3u1k-a1-m3-cA
42 3u1k-a1-m2-cA 619 62 0.2421 0.0372 0.3710 0.39 3u1k-a1-m2-cA_3u1k-a1-m3-cA
43 3u1k-a2-m1-cD 614 62 0.2421 0.0375 0.3710 0.40 3u1k-a2-m1-cD_3u1k-a2-m1-cB
44 3u1k-a2-m1-cB 617 62 0.2421 0.0373 0.3710 0.43 3u1k-a2-m1-cD_3u1k-a2-m1-cB
45 1b8z-a1-m1-cB 67 57 0.2105 0.2985 0.3509 0.45 1b8z-a1-m1-cA_1b8z-a1-m1-cB
46 1b8z-a1-m1-cA 67 57 0.2105 0.2985 0.3509 0.45 1b8z-a1-m1-cA_1b8z-a1-m1-cB
47 4ir0-a1-m1-cB 132 45 0.1684 0.1212 0.3556 1.5 4ir0-a1-m1-cB_4ir0-a1-m1-cA
48 4ir0-a1-m1-cA 143 45 0.1684 0.1119 0.3556 1.7 4ir0-a1-m1-cB_4ir0-a1-m1-cA
49 4ej0-a1-m1-cJ 330 43 0.1474 0.0424 0.3256 8.7 4ej0-a1-m1-cB_4ej0-a1-m1-cJ, 4ej0-a1-m1-cI_4ej0-a1-m1-cJ
50 4ej0-a1-m1-cI 330 43 0.1474 0.0424 0.3256 8.7 4ej0-a1-m1-cI_4ej0-a1-m1-cJ
51 4ej0-a1-m1-cB 330 43 0.1474 0.0424 0.3256 8.7 4ej0-a1-m1-cB_4ej0-a1-m1-cJ

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Reference:
Jacob Schwartz et al.

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