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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
GHYVTIVYASVKTDKTEAFKEATRNHEQSIREPGNRFDILQSADDPTRFVLYEAYKTRKD
AAAHKETAHYLTWRDTVADWAEPRKGVIYGGLYPT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2omo-a3-m1-cD 100 95 1.0000 0.9500 1.0000 1.13e-67 2omo-a3-m1-cG_2omo-a3-m1-cD
2 2omo-a3-m1-cG 95 95 1.0000 1.0000 1.0000 1.47e-67 2omo-a3-m1-cG_2omo-a3-m1-cD
3 2gff-a1-m1-cA 94 92 0.4526 0.4574 0.4674 6.86e-20 2gff-a1-m1-cA_2gff-a1-m1-cB
4 2gff-a1-m1-cB 97 92 0.4526 0.4433 0.4674 7.19e-20 2gff-a1-m1-cA_2gff-a1-m1-cB
5 3qmq-a2-m1-cB 97 95 0.4211 0.4124 0.4211 6.02e-16 3qmq-a2-m1-cB_3qmq-a2-m1-cC
6 3qmq-a2-m1-cC 99 95 0.4211 0.4040 0.4211 6.06e-16 3qmq-a2-m1-cB_3qmq-a2-m1-cC
7 1y0h-a1-m1-cA 101 50 0.1895 0.1782 0.3600 0.023 1y0h-a1-m1-cB_1y0h-a1-m1-cA
8 1y0h-a1-m1-cB 98 50 0.1895 0.1837 0.3600 0.025 1y0h-a1-m1-cB_1y0h-a1-m1-cA
9 4e9x-a1-m1-cC 316 34 0.1158 0.0348 0.3235 0.084 4e9x-a1-m1-cB_4e9x-a1-m1-cC
10 4e9x-a1-m1-cB 316 34 0.1158 0.0348 0.3235 0.084 4e9x-a1-m1-cB_4e9x-a1-m1-cC
11 7lzj-a1-m1-cC 716 63 0.2000 0.0265 0.3016 4.8 7lzj-a1-m1-cB_7lzj-a1-m1-cC
12 7lzj-a1-m1-cB 716 63 0.2000 0.0265 0.3016 4.8 7lzj-a1-m1-cB_7lzj-a1-m1-cC
13 1mzj-a1-m1-cA 334 58 0.1684 0.0479 0.2759 5.6 1mzj-a1-m1-cA_1mzj-a1-m1-cB
14 1mzj-a1-m1-cB 334 58 0.1684 0.0479 0.2759 5.6 1mzj-a1-m1-cA_1mzj-a1-m1-cB
15 2fb0-a1-m2-cA 91 73 0.1895 0.1978 0.2466 6.2 2fb0-a1-m1-cA_2fb0-a1-m2-cA
16 2fb0-a1-m1-cA 91 73 0.1895 0.1978 0.2466 6.2 2fb0-a1-m1-cA_2fb0-a1-m2-cA
17 5b8h-a1-m1-cA 254 19 0.1053 0.0394 0.5263 7.5 5b8h-a1-m1-cB_5b8h-a1-m1-cA
18 5b8h-a1-m1-cB 251 19 0.1053 0.0398 0.5263 7.5 5b8h-a1-m1-cB_5b8h-a1-m1-cA
19 4yeh-a1-m1-cB 224 41 0.1158 0.0491 0.2683 9.5 4yeh-a1-m1-cA_4yeh-a1-m1-cB
20 4yeh-a1-m1-cA 224 41 0.1158 0.0491 0.2683 9.5 4yeh-a1-m1-cA_4yeh-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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