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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=60)
GKARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6j4k-a1-m1-cA 60 60 1.0000 1.0000 1.0000 7.36e-40 6j4k-a1-m1-cB_6j4k-a1-m1-cA
2 6j4k-a1-m1-cB 58 58 0.9667 1.0000 1.0000 3.49e-38 6j4k-a1-m1-cB_6j4k-a1-m1-cA
3 7d3t-a2-m1-cD 62 58 0.8167 0.7903 0.8448 8.45e-33 7d3t-a2-m1-cC_7d3t-a2-m1-cD
4 7d3y-a1-m1-cC 103 57 0.8167 0.4757 0.8596 8.60e-33 7d3y-a1-m1-cE_7d3y-a1-m1-cC
5 7d3t-a2-m1-cC 59 58 0.8167 0.8305 0.8448 9.32e-33 7d3t-a2-m1-cC_7d3t-a2-m1-cD
6 2yx7-a1-m8-cA 150 36 0.2500 0.1000 0.4167 0.39 2yx7-a1-m2-cA_2yx7-a1-m8-cA, 2yx7-a1-m4-cA_2yx7-a1-m8-cA, 2yx7-a1-m6-cA_2yx7-a1-m8-cA
7 2yx7-a1-m6-cA 150 36 0.2500 0.1000 0.4167 0.39 2yx7-a1-m6-cA_2yx7-a1-m8-cA
8 2yx7-a1-m4-cA 150 36 0.2500 0.1000 0.4167 0.39 2yx7-a1-m4-cA_2yx7-a1-m8-cA
9 2yx7-a1-m2-cA 150 36 0.2500 0.1000 0.4167 0.39 2yx7-a1-m2-cA_2yx7-a1-m8-cA
10 2dfa-a1-m4-cA 247 57 0.2667 0.0648 0.2807 4.4 2dfa-a1-m1-cA_2dfa-a1-m4-cA, 2dfa-a1-m2-cA_2dfa-a1-m4-cA, 2dfa-a1-m3-cA_2dfa-a1-m4-cA
11 2dfa-a1-m3-cA 247 57 0.2667 0.0648 0.2807 4.4 2dfa-a1-m3-cA_2dfa-a1-m4-cA
12 2dfa-a1-m2-cA 247 57 0.2667 0.0648 0.2807 4.4 2dfa-a1-m2-cA_2dfa-a1-m4-cA
13 2dfa-a1-m1-cA 247 57 0.2667 0.0648 0.2807 4.4 2dfa-a1-m1-cA_2dfa-a1-m4-cA
14 5w74-a1-m2-cG 477 44 0.2500 0.0314 0.3409 6.2 5w74-a1-m1-cE_5w74-a1-m2-cG
15 5w74-a1-m2-cE 477 44 0.2500 0.0314 0.3409 6.2 5w74-a1-m2-cD_5w74-a1-m2-cE
16 5w74-a1-m2-cD 477 44 0.2500 0.0314 0.3409 6.2 5w74-a1-m2-cD_5w74-a1-m2-cE
17 5w74-a1-m1-cE 477 44 0.2500 0.0314 0.3409 6.2 5w74-a1-m1-cE_5w74-a1-m2-cG
18 3los-a1-m1-cP 532 44 0.2500 0.0282 0.3409 6.5 3los-a1-m1-cB_3los-a1-m1-cP
19 3los-a1-m1-cB 532 44 0.2500 0.0282 0.3409 6.5 3los-a1-m1-cB_3los-a1-m1-cP
20 3kfb-a1-m2-cE 509 44 0.2500 0.0295 0.3409 6.6 3kfb-a1-m2-cD_3kfb-a1-m2-cE
21 3kfb-a1-m2-cD 509 44 0.2500 0.0295 0.3409 6.6 3kfb-a1-m2-cD_3kfb-a1-m2-cE
22 3izh-a1-m1-cP 513 44 0.2500 0.0292 0.3409 6.6 3izh-a1-m1-cB_3izh-a1-m1-cP, 3izh-a1-m1-cO_3izh-a1-m1-cP
23 3izh-a1-m1-cO 513 44 0.2500 0.0292 0.3409 6.6 3izh-a1-m1-cO_3izh-a1-m1-cP
24 3izh-a1-m1-cB 513 44 0.2500 0.0292 0.3409 6.6 3izh-a1-m1-cB_3izh-a1-m1-cP
25 3ruv-a1-m4-cD 516 44 0.2500 0.0291 0.3409 6.7 3ruv-a1-m1-cD_3ruv-a1-m4-cD
26 3ruv-a1-m1-cD 516 44 0.2500 0.0291 0.3409 6.7 3ruv-a1-m1-cD_3ruv-a1-m4-cD
27 8avb-a1-m1-cF 593 19 0.1833 0.0185 0.5789 7.1 8avb-a1-m1-cB_8avb-a1-m1-cF
28 8avb-a1-m1-cB 593 19 0.1833 0.0185 0.5789 7.1 8avb-a1-m1-cB_8avb-a1-m1-cF
29 8avf-a1-m1-cD 596 19 0.1500 0.0151 0.4737 8.2 8avf-a1-m1-cB_8avf-a1-m1-cD
30 8avf-a1-m1-cB 596 19 0.1500 0.0151 0.4737 8.2 8avf-a1-m1-cB_8avf-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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