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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
GKKCYKLENEKLFEEFLELCKMQTADHPEVVPFLYNRQQRAHSLFLASAEFCNILSRVLS
RARSRPAKLYVYINELCTVLKAHSAKKKLN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5grq-a1-m1-cA 90 90 1.0000 1.0000 1.0000 1.88e-62 5grq-a1-m1-cB_5grq-a1-m1-cA
2 5grq-a1-m1-cB 85 85 0.9444 1.0000 1.0000 4.28e-59 5grq-a1-m1-cB_5grq-a1-m1-cA
3 5y6o-a3-m1-cG 105 85 0.9444 0.8095 1.0000 1.48e-58 5y6o-a3-m1-cH_5y6o-a3-m1-cG, 5y6o-a3-m1-cI_5y6o-a3-m1-cG
4 5y6o-a3-m1-cH 103 88 0.9444 0.8252 0.9659 4.22e-58 5y6o-a3-m1-cH_5y6o-a3-m1-cG
5 5y6o-a3-m1-cI 103 83 0.9222 0.8058 1.0000 2.98e-57 5y6o-a3-m1-cI_5y6o-a3-m1-cG
6 5mun-a1-m1-cA 182 26 0.1222 0.0604 0.4231 1.7 5mun-a1-m1-cB_5mun-a1-m1-cA
7 5k3i-a1-m1-cB 657 69 0.2111 0.0289 0.2754 2.7 5k3i-a1-m1-cB_5k3i-a1-m1-cA
8 5k3i-a1-m1-cA 661 65 0.2111 0.0287 0.2923 3.7 5k3i-a1-m1-cB_5k3i-a1-m1-cA
9 6a6e-a2-m1-cD 421 47 0.1556 0.0333 0.2979 8.3 6a6e-a2-m1-cC_6a6e-a2-m1-cD
10 6a6e-a2-m1-cC 421 47 0.1556 0.0333 0.2979 8.3 6a6e-a2-m1-cC_6a6e-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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