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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=67)
GKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYH
NEMKSWA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3fgh-a1-m2-cA 67 67 1.0000 1.0000 1.0000 1.75e-45 3fgh-a1-m1-cA_3fgh-a1-m2-cA
2 3fgh-a1-m1-cA 67 67 1.0000 1.0000 1.0000 1.75e-45 3fgh-a1-m1-cA_3fgh-a1-m2-cA
3 7lbw-a1-m1-cA 193 66 0.9851 0.3420 1.0000 4.65e-44 7lbw-a1-m1-cB_7lbw-a1-m1-cA
4 7lbw-a1-m1-cA 193 50 0.2239 0.0777 0.3000 0.11 7lbw-a1-m1-cB_7lbw-a1-m1-cA
5 7lbw-a1-m1-cB 190 66 0.9851 0.3474 1.0000 5.55e-44 7lbw-a1-m1-cB_7lbw-a1-m1-cA
6 7lbw-a1-m1-cB 190 50 0.2239 0.0789 0.3000 0.10 7lbw-a1-m1-cB_7lbw-a1-m1-cA
7 4qr9-a1-m1-cB 75 71 0.3433 0.3067 0.3239 7.45e-04 4qr9-a1-m1-cA_4qr9-a1-m1-cB
8 4qr9-a1-m1-cA 75 71 0.3433 0.3067 0.3239 7.45e-04 4qr9-a1-m1-cA_4qr9-a1-m1-cB
9 3nm9-a1-m1-cP 73 69 0.3433 0.3151 0.3333 0.18 3nm9-a1-m1-cD_3nm9-a1-m1-cP
10 3nm9-a1-m1-cM 73 69 0.3433 0.3151 0.3333 0.18 3nm9-a1-m1-cD_3nm9-a1-m1-cM
11 3nm9-a1-m1-cD 73 69 0.3433 0.3151 0.3333 0.18 3nm9-a1-m1-cD_3nm9-a1-m1-cM, 3nm9-a1-m1-cD_3nm9-a1-m1-cP
12 1ukk-a1-m1-cB 138 48 0.2090 0.1014 0.2917 1.4 1ukk-a1-m1-cA_1ukk-a1-m1-cB
13 1ukk-a1-m1-cA 138 48 0.2090 0.1014 0.2917 1.4 1ukk-a1-m1-cA_1ukk-a1-m1-cB
14 3gaa-a1-m2-cE 243 38 0.1642 0.0453 0.2895 1.5 3gaa-a1-m1-cD_3gaa-a1-m2-cE, 3gaa-a1-m2-cD_3gaa-a1-m2-cE
15 3gaa-a1-m1-cA 243 38 0.1642 0.0453 0.2895 1.5 3gaa-a1-m2-cD_3gaa-a1-m1-cA
16 3gaa-a1-m2-cD 242 38 0.1642 0.0455 0.2895 1.6 3gaa-a1-m2-cD_3gaa-a1-m1-cA, 3gaa-a1-m2-cD_3gaa-a1-m2-cE
17 3gaa-a1-m1-cD 242 38 0.1642 0.0455 0.2895 1.6 3gaa-a1-m1-cD_3gaa-a1-m2-cE
18 3iru-a2-m1-cB 268 21 0.1343 0.0336 0.4286 2.3 3iru-a2-m1-cA_3iru-a2-m1-cB
19 3iru-a2-m1-cA 268 21 0.1343 0.0336 0.4286 2.3 3iru-a2-m1-cA_3iru-a2-m1-cB
20 3iru-a1-m3-cB 268 21 0.1343 0.0336 0.4286 2.3 3iru-a1-m2-cA_3iru-a1-m3-cB
21 3iru-a1-m2-cA 268 21 0.1343 0.0336 0.4286 2.3 3iru-a1-m2-cA_3iru-a1-m3-cB
22 3t5i-a4-m1-cD 149 35 0.1940 0.0872 0.3714 2.3 3t5i-a4-m1-cQ_3t5i-a4-m1-cD
23 5h2a-a3-m1-cB 257 32 0.1493 0.0389 0.3125 3.9 5h2a-a3-m1-cB_5h2a-a3-m1-cA
24 5h2a-a3-m1-cA 271 32 0.1493 0.0369 0.3125 4.5 5h2a-a3-m1-cB_5h2a-a3-m1-cA
25 6mot-a2-m2-cA 337 29 0.1642 0.0326 0.3793 8.1 6mot-a2-m1-cA_6mot-a2-m2-cA
26 6mot-a2-m1-cA 337 29 0.1642 0.0326 0.3793 8.1 6mot-a2-m1-cA_6mot-a2-m2-cA
27 4e0e-a2-m1-cD 166 38 0.1642 0.0663 0.2895 9.3 4e0e-a2-m1-cC_4e0e-a2-m1-cD
28 4e0e-a2-m1-cC 166 38 0.1642 0.0663 0.2895 9.3 4e0e-a2-m1-cC_4e0e-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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