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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
GKQHVKTKSDWVIQRTPVDPEWLKVYVDDESKRLCLNFKDSFAPITVEVKDIEKQIVFQS
IIFPVAAGEYTLYLGDLSLGQYELYYNASVKVVGNFTL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4g5a-a1-m1-cB 98 98 1.0000 1.0000 1.0000 3.01e-69 4g5a-a1-m1-cA_4g5a-a1-m1-cB
2 4g5a-a1-m1-cA 98 98 1.0000 1.0000 1.0000 3.01e-69 4g5a-a1-m1-cA_4g5a-a1-m1-cB
3 3l4g-a2-m1-cH 589 61 0.1837 0.0306 0.2951 0.75 3l4g-a2-m1-cF_3l4g-a2-m1-cH
4 3l4g-a2-m1-cF 589 61 0.1837 0.0306 0.2951 0.75 3l4g-a2-m1-cF_3l4g-a2-m1-cH
5 2yjn-a1-m2-cA 408 40 0.1327 0.0319 0.3250 1.5 2yjn-a1-m1-cA_2yjn-a1-m2-cA
6 2yjn-a1-m1-cA 408 40 0.1327 0.0319 0.3250 1.5 2yjn-a1-m1-cA_2yjn-a1-m2-cA
7 5c82-a1-m2-cA 166 36 0.1122 0.0663 0.3056 2.3 5c82-a1-m1-cA_5c82-a1-m2-cA
8 5c82-a1-m1-cA 166 36 0.1122 0.0663 0.3056 2.3 5c82-a1-m1-cA_5c82-a1-m2-cA
9 1qzq-a1-m1-cA 439 36 0.1531 0.0342 0.4167 4.7 1qzq-a1-m1-cB_1qzq-a1-m1-cA
10 4mlg-a6-m1-cL 322 26 0.1224 0.0373 0.4615 6.1 4mlg-a6-m1-cL_4mlg-a6-m1-cK
11 4mlg-a6-m1-cK 324 26 0.1224 0.0370 0.4615 6.1 4mlg-a6-m1-cL_4mlg-a6-m1-cK
12 4xoh-a2-m1-cA 266 77 0.2143 0.0789 0.2727 7.3 4xoh-a2-m1-cA_4xoh-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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