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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=82)
GKRLYAVAYDIPDDTRRVKLANLLKSYGERVQLSVFECYLDERLLEDLRRRARRLLDLGQ
DALRIYPVAGQVEVLGVGPLPE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1zpw-a2-m2-cX 82 82 1.0000 1.0000 1.0000 5.59e-53 1zpw-a2-m1-cX_1zpw-a2-m2-cX
2 1zpw-a2-m1-cX 82 82 1.0000 1.0000 1.0000 5.59e-53 1zpw-a2-m1-cX_1zpw-a2-m2-cX
3 4es1-a1-m2-cA 95 87 0.3902 0.3368 0.3678 1.67e-10 4es1-a1-m1-cA_4es1-a1-m2-cA
4 4es1-a1-m1-cA 95 87 0.3902 0.3368 0.3678 1.67e-10 4es1-a1-m1-cA_4es1-a1-m2-cA
5 7cr8-a6-m1-cF 93 67 0.3171 0.2796 0.3881 3.14e-10 7cr8-a6-m1-cE_7cr8-a6-m1-cF
6 7cr8-a6-m1-cE 93 67 0.3171 0.2796 0.3881 3.14e-10 7cr8-a6-m1-cE_7cr8-a6-m1-cF
7 8d3q-a1-m1-cF 98 88 0.3902 0.3265 0.3636 3.46e-10 8d3q-a1-m1-cE_8d3q-a1-m1-cF
8 8d3q-a1-m1-cE 98 88 0.3902 0.3265 0.3636 3.46e-10 8d3q-a1-m1-cE_8d3q-a1-m1-cF
9 3oq2-a3-m3-cA 99 80 0.3415 0.2828 0.3500 2.58e-08 3oq2-a3-m3-cA_3oq2-a3-m4-cB
10 3oq2-a3-m1-cA 99 80 0.3415 0.2828 0.3500 2.58e-08 3oq2-a3-m1-cA_3oq2-a3-m4-cB
11 3oq2-a2-m2-cA 99 80 0.3415 0.2828 0.3500 2.58e-08 3oq2-a2-m2-cA_3oq2-a2-m2-cB
12 3oq2-a3-m4-cB 102 80 0.3415 0.2745 0.3500 2.71e-08 3oq2-a3-m1-cA_3oq2-a3-m4-cB, 3oq2-a3-m3-cA_3oq2-a3-m4-cB
13 3oq2-a2-m2-cB 102 80 0.3415 0.2745 0.3500 2.71e-08 3oq2-a2-m2-cA_3oq2-a2-m2-cB
14 3exc-a1-m2-cX 75 64 0.3415 0.3733 0.4375 1.99e-07 3exc-a1-m1-cX_3exc-a1-m2-cX
15 3exc-a1-m1-cX 75 64 0.3415 0.3733 0.4375 1.99e-07 3exc-a1-m1-cX_3exc-a1-m2-cX
16 4qr2-a1-m1-cA 83 79 0.3293 0.3253 0.3418 6.12e-07 4qr2-a1-m1-cB_4qr2-a1-m1-cA
17 4qr2-a1-m1-cB 82 65 0.2805 0.2805 0.3538 9.34e-07 4qr2-a1-m1-cB_4qr2-a1-m1-cA
18 5h1o-a1-m1-cB 83 70 0.3171 0.3133 0.3714 4.32e-06 5h1o-a1-m1-cB_5h1o-a1-m1-cA
19 5h1o-a1-m1-cA 86 82 0.3659 0.3488 0.3659 4.49e-06 5h1o-a1-m1-cB_5h1o-a1-m1-cA
20 7f84-a1-m1-cB 89 83 0.3049 0.2809 0.3012 2.01e-05 7f84-a1-m1-cA_7f84-a1-m1-cB
21 7f84-a1-m1-cA 89 83 0.3049 0.2809 0.3012 2.01e-05 7f84-a1-m1-cA_7f84-a1-m1-cB
22 7kfu-a1-m1-cB 96 35 0.2073 0.1771 0.4857 8.30e-05 7kfu-a1-m1-cA_7kfu-a1-m1-cB
23 7kfu-a1-m1-cA 96 35 0.2073 0.1771 0.4857 8.30e-05 7kfu-a1-m1-cA_7kfu-a1-m1-cB
24 7mid-a1-m1-cD 91 40 0.2073 0.1868 0.4250 1.37e-04 7mid-a1-m1-cD_7mid-a1-m1-cC
25 7mid-a1-m1-cC 95 40 0.2073 0.1789 0.4250 1.56e-04 7mid-a1-m1-cD_7mid-a1-m1-cC
26 2ivy-a1-m2-cA 88 46 0.2439 0.2273 0.4348 7.56e-04 2ivy-a1-m1-cA_2ivy-a1-m2-cA
27 2ivy-a1-m1-cA 88 46 0.2439 0.2273 0.4348 7.56e-04 2ivy-a1-m1-cA_2ivy-a1-m2-cA
28 6k2e-a1-m1-cA 88 73 0.3049 0.2841 0.3425 0.34 6k2e-a1-m1-cB_6k2e-a1-m1-cA
29 6k2e-a1-m1-cB 87 66 0.2805 0.2644 0.3485 1.6 6k2e-a1-m1-cB_6k2e-a1-m1-cA
30 1q7s-a3-m1-cA 117 44 0.2195 0.1538 0.4091 4.3 1q7s-a3-m1-cB_1q7s-a3-m1-cA
31 2zvi-a2-m1-cD 388 53 0.2195 0.0464 0.3396 4.4 2zvi-a2-m1-cC_2zvi-a2-m1-cD
32 2zvi-a2-m1-cC 385 53 0.2195 0.0468 0.3396 4.5 2zvi-a2-m1-cC_2zvi-a2-m1-cD
33 3syn-a5-m2-cD 258 34 0.1463 0.0465 0.3529 4.6 3syn-a5-m1-cA_3syn-a5-m2-cD, 3syn-a5-m2-cC_3syn-a5-m2-cD
34 3syn-a5-m2-cC 258 34 0.1463 0.0465 0.3529 4.6 3syn-a5-m2-cC_3syn-a5-m2-cD
35 3syn-a5-m1-cA 258 34 0.1463 0.0465 0.3529 4.6 3syn-a5-m1-cA_3syn-a5-m2-cD
36 6l97-a1-m1-cA 335 42 0.1829 0.0448 0.3571 5.0 6l97-a1-m1-cA_6l97-a1-m1-cB
37 6l97-a1-m1-cB 337 42 0.1829 0.0445 0.3571 5.0 6l97-a1-m1-cA_6l97-a1-m1-cB
38 5gtw-a2-m1-cC 548 39 0.1707 0.0255 0.3590 6.8 5gtw-a2-m1-cB_5gtw-a2-m1-cC
39 5gtw-a2-m1-cB 548 39 0.1707 0.0255 0.3590 6.8 5gtw-a2-m1-cB_5gtw-a2-m1-cC
40 4nas-a2-m1-cC 389 69 0.2683 0.0566 0.3188 8.0 4nas-a2-m1-cD_4nas-a2-m1-cC
41 4nas-a2-m1-cD 385 69 0.2683 0.0571 0.3188 8.9 4nas-a2-m1-cD_4nas-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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