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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=82)
GLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDE
LERALAQAFPGLQATIHVEPEG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3byr-a1-m2-cA 89 82 1.0000 0.9213 1.0000 8.85e-54 3byr-a1-m1-cA_3byr-a1-m2-cA
2 3byr-a1-m1-cA 89 82 1.0000 0.9213 1.0000 8.85e-54 3byr-a1-m1-cA_3byr-a1-m2-cA
3 3byp-a1-m1-cB 82 82 1.0000 1.0000 1.0000 1.12e-53 3byp-a1-m1-cA_3byp-a1-m1-cB
4 3byp-a1-m1-cA 82 82 1.0000 1.0000 1.0000 1.12e-53 3byp-a1-m1-cA_3byp-a1-m1-cB
5 3h90-a1-m1-cC 283 55 0.2683 0.0777 0.4000 1.35e-11 3h90-a1-m1-cA_3h90-a1-m1-cC
6 3h90-a1-m1-cA 283 55 0.2683 0.0777 0.4000 1.35e-11 3h90-a1-m1-cA_3h90-a1-m1-cC
7 8f6i-a1-m1-cA 274 76 0.3293 0.0985 0.3553 2.17e-09 8f6i-a1-m1-cA_8f6i-a1-m1-cB
8 3j1z-a1-m9-cQ 296 76 0.3293 0.0912 0.3553 2.60e-09 3j1z-a1-m1-cP_3j1z-a1-m9-cQ, 3j1z-a1-m12-cP_3j1z-a1-m9-cQ, 3j1z-a1-m9-cP_3j1z-a1-m9-cQ
9 3j1z-a1-m9-cP 296 76 0.3293 0.0912 0.3553 2.60e-09 3j1z-a1-m14-cP_3j1z-a1-m9-cP, 3j1z-a1-m9-cP_3j1z-a1-m9-cQ
10 3j1z-a1-m14-cP 296 76 0.3293 0.0912 0.3553 2.60e-09 3j1z-a1-m14-cP_3j1z-a1-m9-cP
11 3j1z-a1-m12-cP 296 76 0.3293 0.0912 0.3553 2.60e-09 3j1z-a1-m12-cP_3j1z-a1-m9-cQ
12 3j1z-a1-m1-cP 296 76 0.3293 0.0912 0.3553 2.60e-09 3j1z-a1-m1-cP_3j1z-a1-m9-cQ
13 8f6i-a1-m1-cB 276 76 0.3293 0.0978 0.3553 2.74e-09 8f6i-a1-m1-cA_8f6i-a1-m1-cB
14 8f6k-a1-m1-cD 287 76 0.3171 0.0906 0.3421 1.19e-07 8f6k-a1-m1-cA_8f6k-a1-m1-cD, 8f6k-a1-m1-cB_8f6k-a1-m1-cD, 8f6k-a1-m1-cC_8f6k-a1-m1-cD
15 8f6k-a1-m1-cB 287 76 0.3171 0.0906 0.3421 1.19e-07 8f6k-a1-m1-cB_8f6k-a1-m1-cD
16 8f6k-a1-m1-cC 279 76 0.3171 0.0932 0.3421 1.46e-07 8f6k-a1-m1-cC_8f6k-a1-m1-cD
17 8f6k-a1-m1-cA 279 76 0.3171 0.0932 0.3421 1.46e-07 8f6k-a1-m1-cA_8f6k-a1-m1-cD
18 6vda-a1-m2-cA 86 58 0.2317 0.2209 0.3276 5.55e-05 6vda-a1-m1-cA_6vda-a1-m2-cA
19 6vda-a1-m1-cA 86 58 0.2317 0.2209 0.3276 5.55e-05 6vda-a1-m1-cA_6vda-a1-m2-cA
20 1k3y-a1-m1-cB 221 72 0.2439 0.0905 0.2778 0.015 1k3y-a1-m1-cA_1k3y-a1-m1-cB
21 1k3y-a1-m1-cA 221 72 0.2439 0.0905 0.2778 0.015 1k3y-a1-m1-cA_1k3y-a1-m1-cB
22 1fo1-a1-m1-cB 163 34 0.1585 0.0798 0.3824 4.0 1fo1-a1-m1-cB_1fo1-a1-m1-cA
23 3hdv-a3-m1-cB 123 27 0.1707 0.1138 0.5185 4.3 3hdv-a3-m1-cD_3hdv-a3-m1-cB
24 3hdv-a1-m1-cB 123 27 0.1707 0.1138 0.5185 4.3 3hdv-a1-m1-cC_3hdv-a1-m1-cB
25 3hdv-a3-m1-cD 114 27 0.1707 0.1228 0.5185 4.4 3hdv-a3-m1-cD_3hdv-a3-m1-cB
26 3hdv-a1-m1-cC 118 27 0.1707 0.1186 0.5185 4.4 3hdv-a1-m1-cC_3hdv-a1-m1-cB
27 1fo1-a1-m1-cA 215 34 0.1585 0.0605 0.3824 4.5 1fo1-a1-m1-cB_1fo1-a1-m1-cA
28 6zjc-a2-m1-cD 220 72 0.2317 0.0864 0.2639 5.2 6zjc-a2-m1-cC_6zjc-a2-m1-cD
29 6zjc-a2-m1-cC 220 72 0.2317 0.0864 0.2639 5.2 6zjc-a2-m1-cC_6zjc-a2-m1-cD
30 2cuy-a1-m1-cB 305 42 0.2317 0.0623 0.4524 5.8 2cuy-a1-m1-cA_2cuy-a1-m1-cB
31 2cuy-a1-m1-cA 305 42 0.2317 0.0623 0.4524 5.8 2cuy-a1-m1-cA_2cuy-a1-m1-cB
32 5j1j-a1-m1-cB 248 39 0.1585 0.0524 0.3333 7.9 5j1j-a1-m1-cB_5j1j-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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