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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
GMESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAV
SAVMKTIRIFQKLNYMLLAKRLQEEKEKVDKQYKS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7k3r-a1-m1-cU 95 95 1.0000 1.0000 1.0000 1.38e-65 7k3r-a1-m1-cG_7k3r-a1-m1-cU, 7k3r-a1-m1-cM_7k3r-a1-m1-cU, 7k3r-a1-m1-cO_7k3r-a1-m1-cU
2 7k3r-a1-m1-cO 95 95 1.0000 1.0000 1.0000 1.38e-65 7k3r-a1-m1-cO_7k3r-a1-m1-cU
3 7k3r-a1-m1-cM 95 95 1.0000 1.0000 1.0000 1.38e-65 7k3r-a1-m1-cM_7k3r-a1-m1-cU
4 7k3r-a1-m1-cG 95 95 1.0000 1.0000 1.0000 1.38e-65 7k3r-a1-m1-cG_7k3r-a1-m1-cU
5 4n1k-a3-m2-cD 94 87 0.2737 0.2766 0.2989 4.07e-04 4n1k-a3-m1-cA_4n1k-a3-m2-cD
6 4n1k-a3-m2-cC 86 86 0.2632 0.2907 0.2907 0.001 4n1k-a3-m2-cC_4n1k-a3-m1-cA
7 4n1k-a3-m1-cA 88 86 0.2632 0.2841 0.2907 0.001 4n1k-a3-m1-cA_4n1k-a3-m2-cD, 4n1k-a3-m2-cC_4n1k-a3-m1-cA
8 4ewi-a3-m2-cA 91 70 0.2105 0.2198 0.2857 0.49 4ewi-a3-m1-cA_4ewi-a3-m2-cA, 4ewi-a3-m2-cB_4ewi-a3-m2-cA
9 4ewi-a3-m1-cA 91 70 0.2105 0.2198 0.2857 0.49 4ewi-a3-m1-cA_4ewi-a3-m2-cA, 4ewi-a3-m2-cB_4ewi-a3-m1-cA
10 4ewi-a3-m2-cB 90 70 0.2105 0.2222 0.2857 0.58 4ewi-a3-m2-cB_4ewi-a3-m1-cA, 4ewi-a3-m2-cB_4ewi-a3-m2-cA
11 3gvi-a2-m2-cF 314 26 0.1053 0.0318 0.3846 3.3 3gvi-a2-m1-cE_3gvi-a2-m2-cF, 3gvi-a2-m1-cF_3gvi-a2-m2-cF, 3gvi-a2-m2-cE_3gvi-a2-m2-cF
12 3gvi-a2-m2-cE 314 26 0.1053 0.0318 0.3846 3.3 3gvi-a2-m2-cE_3gvi-a2-m2-cF
13 3gvi-a2-m1-cF 314 26 0.1053 0.0318 0.3846 3.3 3gvi-a2-m1-cF_3gvi-a2-m2-cF
14 3gvi-a2-m1-cE 314 26 0.1053 0.0318 0.3846 3.3 3gvi-a2-m1-cE_3gvi-a2-m2-cF
15 7kh2-a2-m1-cD 411 80 0.2737 0.0633 0.3250 3.6 7kh2-a2-m1-cB_7kh2-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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