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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=65)
GMQFHIDDMTCGGCASTVKKTILTLDANATVRTDPATRLVDVETSLSAEQIAAALQKAGF
PPRER

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5f0u-a1-m2-cA 65 65 1.0000 1.0000 1.0000 1.12e-43 5f0u-a1-m1-cA_5f0u-a1-m2-cA
2 5f0u-a1-m1-cA 65 65 1.0000 1.0000 1.0000 1.12e-43 5f0u-a1-m1-cA_5f0u-a1-m2-cA
3 2xmv-a1-m1-cF 63 59 0.2923 0.3016 0.3220 3.39e-06 2xmv-a1-m1-cA_2xmv-a1-m1-cF, 2xmv-a1-m1-cE_2xmv-a1-m1-cF
4 2xmv-a1-m1-cE 63 59 0.2923 0.3016 0.3220 3.39e-06 2xmv-a1-m1-cE_2xmv-a1-m1-cF
5 2xmv-a1-m1-cA 63 59 0.2923 0.3016 0.3220 3.39e-06 2xmv-a1-m1-cA_2xmv-a1-m1-cF
6 4a47-a2-m3-cB 63 59 0.3077 0.3175 0.3390 9.66e-06 4a47-a2-m1-cB_4a47-a2-m3-cB
7 4a47-a2-m1-cB 63 59 0.3077 0.3175 0.3390 9.66e-06 4a47-a2-m1-cB_4a47-a2-m3-cB
8 4a46-a1-m1-cC 63 59 0.2923 0.3016 0.3220 2.58e-05 4a46-a1-m1-cA_4a46-a1-m1-cC
9 4a46-a1-m1-cA 63 59 0.2923 0.3016 0.3220 2.58e-05 4a46-a1-m1-cA_4a46-a1-m1-cC
10 2xmt-a1-m1-cB 63 59 0.2923 0.3016 0.3220 2.58e-05 2xmt-a1-m1-cA_2xmt-a1-m1-cB
11 2xmt-a1-m1-cA 63 59 0.2923 0.3016 0.3220 2.58e-05 2xmt-a1-m1-cA_2xmt-a1-m1-cB
12 7zc3-a1-m1-cB 67 52 0.2769 0.2687 0.3462 0.003 7zc3-a1-m1-cA_7zc3-a1-m1-cB
13 7zc3-a1-m1-cA 67 52 0.2769 0.2687 0.3462 0.003 7zc3-a1-m1-cA_7zc3-a1-m1-cB
14 3iwl-a2-m2-cA 66 52 0.2769 0.2727 0.3462 0.003 3iwl-a2-m1-cA_3iwl-a2-m2-cA
15 3iwl-a2-m1-cA 66 52 0.2769 0.2727 0.3462 0.003 3iwl-a2-m1-cA_3iwl-a2-m2-cA
16 3i9z-a1-m3-cA 69 60 0.2308 0.2174 0.2500 0.68 3i9z-a1-m2-cA_3i9z-a1-m3-cA
17 3i9z-a1-m2-cA 69 60 0.2308 0.2174 0.2500 0.68 3i9z-a1-m2-cA_3i9z-a1-m3-cA
18 2qif-a1-m1-cA 69 60 0.2308 0.2174 0.2500 0.68 2qif-a1-m1-cB_2qif-a1-m1-cA
19 2qif-a1-m1-cB 68 60 0.2308 0.2206 0.2500 0.70 2qif-a1-m1-cB_2qif-a1-m1-cA
20 6ff2-a1-m1-cB 67 60 0.1846 0.1791 0.2000 2.1 6ff2-a1-m1-cA_6ff2-a1-m1-cB
21 6ff2-a1-m1-cA 67 60 0.1846 0.1791 0.2000 2.1 6ff2-a1-m1-cA_6ff2-a1-m1-cB
22 7pqh-a1-m1-cB 1208 42 0.2462 0.0132 0.3810 2.4 7pqh-a1-m1-cB_7pqh-a1-m1-cJ
23 7pqh-a1-m1-cJ 1213 42 0.2462 0.0132 0.3810 2.4 7pqh-a1-m1-cB_7pqh-a1-m1-cJ
24 1o9j-a1-m1-cD 494 20 0.1385 0.0182 0.4500 2.4 1o9j-a1-m1-cA_1o9j-a1-m1-cD, 1o9j-a1-m1-cB_1o9j-a1-m1-cD, 1o9j-a1-m1-cC_1o9j-a1-m1-cD
25 1o9j-a1-m1-cC 494 20 0.1385 0.0182 0.4500 2.4 1o9j-a1-m1-cC_1o9j-a1-m1-cD
26 1o9j-a1-m1-cB 494 20 0.1385 0.0182 0.4500 2.4 1o9j-a1-m1-cB_1o9j-a1-m1-cD
27 1o9j-a1-m1-cA 494 20 0.1385 0.0182 0.4500 2.4 1o9j-a1-m1-cA_1o9j-a1-m1-cD
28 7rad-a1-m2-cB 493 20 0.1538 0.0203 0.5000 2.4 7rad-a1-m1-cA_7rad-a1-m2-cB, 7rad-a1-m1-cB_7rad-a1-m2-cB
29 7rad-a1-m1-cB 493 20 0.1538 0.0203 0.5000 2.4 7rad-a1-m1-cB_7rad-a1-m2-cB
30 7rad-a1-m1-cA 493 20 0.1538 0.0203 0.5000 2.4 7rad-a1-m1-cA_7rad-a1-m2-cB
31 7mjd-a1-m1-cB 493 20 0.1538 0.0203 0.5000 2.4 7mjd-a1-m1-cA_7mjd-a1-m1-cB
32 7mjd-a1-m1-cA 493 20 0.1538 0.0203 0.5000 2.4 7mjd-a1-m1-cA_7mjd-a1-m1-cB
33 1ukk-a1-m1-cB 138 31 0.1692 0.0797 0.3548 8.9 1ukk-a1-m1-cA_1ukk-a1-m1-cB
34 1ukk-a1-m1-cA 138 31 0.1692 0.0797 0.3548 8.9 1ukk-a1-m1-cA_1ukk-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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