Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=22)
GNADELYKEEDLQERRKLRKKR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3twf-a2-m1-cB 23 22 1.0000 0.9565 1.0000 1.13e-08 3twf-a2-m1-cA_3twf-a2-m1-cB
2 3twf-a2-m1-cA 22 22 1.0000 1.0000 1.0000 1.43e-08 3twf-a2-m1-cA_3twf-a2-m1-cB
3 3twe-a2-m1-cA 26 15 0.6364 0.5385 0.9333 0.10 3twe-a2-m1-cB_3twe-a2-m1-cA
4 3twe-a1-m1-cA 26 15 0.6364 0.5385 0.9333 0.10 3twe-a1-m2-cB_3twe-a1-m1-cA
5 3twe-a2-m1-cB 25 14 0.5909 0.5200 0.9286 1.00 3twe-a2-m1-cB_3twe-a2-m1-cA
6 3twe-a1-m2-cB 25 14 0.5909 0.5200 0.9286 1.00 3twe-a1-m2-cB_3twe-a1-m1-cA
7 1u2m-a1-m1-cC 137 21 0.5000 0.0803 0.5238 1.2 1u2m-a1-m1-cA_1u2m-a1-m1-cC, 1u2m-a1-m1-cB_1u2m-a1-m1-cC
8 7m3k-a1-m4-cA 587 17 0.4545 0.0170 0.5882 3.1 7m3k-a1-m1-cA_7m3k-a1-m4-cA, 7m3k-a1-m2-cA_7m3k-a1-m4-cA, 7m3k-a1-m3-cA_7m3k-a1-m4-cA
9 7m3k-a1-m3-cA 587 17 0.4545 0.0170 0.5882 3.1 7m3k-a1-m3-cA_7m3k-a1-m4-cA
10 7m3k-a1-m2-cA 587 17 0.4545 0.0170 0.5882 3.1 7m3k-a1-m2-cA_7m3k-a1-m4-cA
11 7m3k-a1-m1-cA 587 17 0.4545 0.0170 0.5882 3.1 7m3k-a1-m1-cA_7m3k-a1-m4-cA
12 3rde-a5-m1-cD 552 14 0.3636 0.0145 0.5714 9.3 3rde-a5-m1-cA_3rde-a5-m1-cD, 3rde-a5-m1-cB_3rde-a5-m1-cD, 3rde-a5-m1-cC_3rde-a5-m1-cD
13 3rde-a5-m1-cC 552 14 0.3636 0.0145 0.5714 9.3 3rde-a5-m1-cA_3rde-a5-m1-cC, 3rde-a5-m1-cC_3rde-a5-m1-cD
14 3rde-a5-m1-cB 552 14 0.3636 0.0145 0.5714 9.3 3rde-a5-m1-cB_3rde-a5-m1-cD
15 3rde-a5-m1-cA 552 14 0.3636 0.0145 0.5714 9.3 3rde-a5-m1-cA_3rde-a5-m1-cC, 3rde-a5-m1-cA_3rde-a5-m1-cD
16 2p0m-a3-m1-cB 662 12 0.3182 0.0106 0.5833 9.7 2p0m-a3-m1-cA_2p0m-a3-m1-cB
17 2p0m-a3-m1-cA 662 12 0.3182 0.0106 0.5833 9.7 2p0m-a3-m1-cA_2p0m-a3-m1-cB

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600