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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=71)
GNVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAG
QALLCQTAVGA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2fz6-a8-m1-cC 71 71 1.0000 1.0000 1.0000 5.67e-46 2fz6-a8-m1-cD_2fz6-a8-m1-cC
2 2gvm-a3-m2-cC 70 70 0.9859 1.0000 1.0000 3.16e-45 2gvm-a3-m2-cA_2gvm-a3-m2-cC
3 2gvm-a3-m2-cA 70 70 0.9859 1.0000 1.0000 3.16e-45 2gvm-a3-m1-cA_2gvm-a3-m2-cA, 2gvm-a3-m2-cA_2gvm-a3-m2-cC
4 2gvm-a3-m1-cA 70 70 0.9859 1.0000 1.0000 3.16e-45 2gvm-a3-m1-cA_2gvm-a3-m2-cA
5 2gvm-a2-m5-cD 70 70 0.9859 1.0000 1.0000 3.16e-45 2gvm-a2-m5-cB_2gvm-a2-m5-cD
6 2gvm-a2-m5-cB 70 70 0.9859 1.0000 1.0000 3.16e-45 2gvm-a2-m5-cB_2gvm-a2-m5-cD
7 2fz6-a8-m1-cD 69 69 0.9718 1.0000 1.0000 1.09e-44 2fz6-a8-m1-cD_2fz6-a8-m1-cC
8 2fz6-a7-m4-cD 69 69 0.9718 1.0000 1.0000 1.09e-44 2fz6-a7-m1-cB_2fz6-a7-m4-cD
9 2fz6-a5-m4-cD 69 69 0.9718 1.0000 1.0000 1.09e-44 2fz6-a5-m2-cB_2fz6-a5-m4-cD, 2fz6-a5-m3-cD_2fz6-a5-m4-cD
10 2fz6-a5-m3-cD 69 69 0.9718 1.0000 1.0000 1.09e-44 2fz6-a5-m3-cD_2fz6-a5-m4-cD
11 2fz6-a7-m1-cB 69 69 0.9718 1.0000 1.0000 1.97e-44 2fz6-a7-m1-cB_2fz6-a7-m4-cD
12 2fz6-a5-m2-cB 69 69 0.9718 1.0000 1.0000 1.97e-44 2fz6-a5-m2-cB_2fz6-a5-m4-cD
13 3qqt-a2-m7-cB 70 68 0.6338 0.6429 0.6618 1.84e-25 3qqt-a2-m4-cA_3qqt-a2-m7-cB, 3qqt-a2-m4-cB_3qqt-a2-m7-cB, 3qqt-a2-m7-cA_3qqt-a2-m7-cB
14 3qqt-a2-m7-cA 70 68 0.6338 0.6429 0.6618 1.84e-25 3qqt-a2-m7-cA_3qqt-a2-m7-cB
15 3qqt-a2-m4-cB 70 68 0.6338 0.6429 0.6618 1.84e-25 3qqt-a2-m4-cB_3qqt-a2-m7-cB
16 3qqt-a2-m4-cA 70 68 0.6338 0.6429 0.6618 1.84e-25 3qqt-a2-m4-cA_3qqt-a2-m7-cB
17 3qqt-a1-m8-cB 70 68 0.6338 0.6429 0.6618 1.84e-25 3qqt-a1-m4-cA_3qqt-a1-m8-cB, 3qqt-a1-m7-cB_3qqt-a1-m8-cB
18 3qqt-a1-m7-cB 70 68 0.6338 0.6429 0.6618 1.84e-25 3qqt-a1-m7-cB_3qqt-a1-m8-cB
19 3qqt-a1-m4-cA 70 68 0.6338 0.6429 0.6618 1.84e-25 3qqt-a1-m4-cA_3qqt-a1-m8-cB
20 2pl7-a1-m1-cB 67 66 0.6197 0.6567 0.6667 3.55e-24 2pl7-a1-m1-cA_2pl7-a1-m1-cB
21 2pl7-a1-m1-cA 67 66 0.6197 0.6567 0.6667 3.55e-24 2pl7-a1-m1-cA_2pl7-a1-m1-cB
22 6u3g-a1-m1-cB 397 34 0.1408 0.0252 0.2941 5.4 6u3g-a1-m1-cA_6u3g-a1-m1-cB
23 6u3g-a1-m1-cA 397 34 0.1408 0.0252 0.2941 5.4 6u3g-a1-m1-cA_6u3g-a1-m1-cB
24 6u3e-a1-m1-cB 397 34 0.1408 0.0252 0.2941 5.4 6u3e-a1-m1-cA_6u3e-a1-m1-cB
25 6u3e-a1-m1-cA 397 34 0.1408 0.0252 0.2941 5.4 6u3e-a1-m1-cA_6u3e-a1-m1-cB
26 3of5-a1-m1-cB 216 45 0.1972 0.0648 0.3111 6.2 3of5-a1-m1-cB_3of5-a1-m1-cA
27 6p29-a1-m1-cA 134 31 0.1549 0.0821 0.3548 9.2 6p29-a1-m1-cB_6p29-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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