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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
GPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRG
DDPWTEHAKWFPGCQFLLRSKGQEYINNIH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2i3h-a7-m1-cB 95 90 1.0000 0.9474 1.0000 2.85e-65 2i3h-a7-m2-cA_2i3h-a7-m1-cB
2 2i3h-a6-m2-cB 95 90 1.0000 0.9474 1.0000 2.85e-65 2i3h-a6-m2-cA_2i3h-a6-m2-cB
3 2i3h-a7-m2-cA 90 90 1.0000 1.0000 1.0000 4.52e-65 2i3h-a7-m2-cA_2i3h-a7-m1-cB
4 2i3h-a6-m2-cA 90 90 1.0000 1.0000 1.0000 4.52e-65 2i3h-a6-m2-cA_2i3h-a6-m2-cB
5 1oxn-a6-m1-cB 101 90 0.9000 0.8020 0.9000 3.13e-60 1oxn-a6-m1-cD_1oxn-a6-m1-cB
6 1oxn-a7-m1-cA 99 90 0.9000 0.8182 0.9000 3.21e-60 1oxn-a7-m1-cA_1oxn-a7-m1-cD
7 1oxq-a9-m1-cD 100 90 0.9000 0.8100 0.9000 3.58e-60 1oxq-a9-m2-cE_1oxq-a9-m1-cD
8 1oxn-a7-m1-cD 100 90 0.9000 0.8100 0.9000 3.58e-60 1oxn-a7-m1-cA_1oxn-a7-m1-cD
9 1oxn-a6-m1-cD 100 90 0.9000 0.8100 0.9000 3.58e-60 1oxn-a6-m1-cD_1oxn-a6-m1-cB
10 1oxq-a9-m2-cE 94 90 0.9000 0.8617 0.9000 5.37e-60 1oxq-a9-m2-cE_1oxq-a9-m1-cD
11 2uvl-a1-m1-cB 95 85 0.4667 0.4421 0.4941 3.25e-31 2uvl-a1-m1-cA_2uvl-a1-m1-cB
12 3mup-a1-m1-cC 103 85 0.4889 0.4272 0.5176 3.74e-31 3mup-a1-m1-cD_3mup-a1-m1-cC
13 2uvl-a1-m1-cA 94 85 0.4667 0.4468 0.4941 3.85e-31 2uvl-a1-m1-cA_2uvl-a1-m1-cB
14 3mup-a1-m1-cD 102 85 0.4889 0.4314 0.5176 4.15e-31 3mup-a1-m1-cB_3mup-a1-m1-cD, 3mup-a1-m1-cD_3mup-a1-m1-cC
15 3mup-a1-m1-cB 100 85 0.4889 0.4400 0.5176 4.52e-31 3mup-a1-m1-cB_3mup-a1-m1-cD
16 1xb0-a1-m1-cF 103 89 0.5333 0.4660 0.5393 8.39e-30 1xb0-a1-m1-cE_1xb0-a1-m1-cF
17 1xb1-a2-m1-cB 102 89 0.5333 0.4706 0.5393 9.93e-30 1xb1-a2-m2-cF_1xb1-a2-m1-cB
18 1xb0-a1-m1-cE 93 89 0.5333 0.5161 0.5393 1.03e-29 1xb0-a1-m1-cE_1xb0-a1-m1-cF
19 1xb1-a2-m2-cF 89 89 0.5333 0.5393 0.5393 1.16e-29 1xb1-a2-m2-cF_1xb1-a2-m1-cA, 1xb1-a2-m2-cF_1xb1-a2-m1-cB
20 1xb1-a2-m1-cA 90 89 0.5333 0.5333 0.5393 1.30e-29 1xb1-a2-m2-cF_1xb1-a2-m1-cA
21 4hy0-a3-m1-cE 96 89 0.5333 0.5000 0.5393 1.74e-29 4hy0-a3-m1-cE_4hy0-a3-m1-cD
22 4hy0-a3-m1-cD 98 89 0.5333 0.4898 0.5393 1.93e-29 4hy0-a3-m1-cE_4hy0-a3-m1-cD
23 3cm2-a5-m1-cG 102 89 0.5333 0.4706 0.5393 2.02e-29 3cm2-a5-m1-cE_3cm2-a5-m1-cG
24 3cm2-a5-m1-cE 102 89 0.5333 0.4706 0.5393 2.02e-29 3cm2-a5-m1-cE_3cm2-a5-m1-cG
25 4ec4-a5-m1-cE 108 89 0.5333 0.4444 0.5393 2.25e-29 4ec4-a5-m1-cL_4ec4-a5-m1-cE
26 5oqw-a1-m1-cB 107 89 0.5333 0.4486 0.5393 2.57e-29 5oqw-a1-m1-cA_5oqw-a1-m1-cB
27 5oqw-a1-m1-cA 106 89 0.5333 0.4528 0.5393 2.61e-29 5oqw-a1-m1-cA_5oqw-a1-m1-cB
28 2opy-a1-m2-cA 106 89 0.5333 0.4528 0.5393 2.61e-29 2opy-a1-m1-cA_2opy-a1-m2-cA
29 2opy-a1-m1-cA 106 89 0.5333 0.4528 0.5393 2.61e-29 2opy-a1-m1-cA_2opy-a1-m2-cA
30 4ec4-a5-m1-cL 107 89 0.5333 0.4486 0.5393 2.75e-29 4ec4-a5-m1-cL_4ec4-a5-m1-cE
31 4j3y-a1-m1-cA 83 77 0.4222 0.4578 0.4935 1.36e-21 4j3y-a1-m1-cC_4j3y-a1-m1-cA
32 4j3y-a1-m1-cC 77 74 0.4111 0.4805 0.5000 3.46e-21 4j3y-a1-m1-cC_4j3y-a1-m1-cA
33 1m4m-a3-m3-cA 112 80 0.3444 0.2768 0.3875 1.37e-13 1m4m-a3-m1-cA_1m4m-a3-m3-cA
34 1m4m-a3-m1-cA 112 80 0.3444 0.2768 0.3875 1.37e-13 1m4m-a3-m1-cA_1m4m-a3-m3-cA
35 1m4m-a2-m2-cA 112 80 0.3444 0.2768 0.3875 1.37e-13 1m4m-a2-m1-cA_1m4m-a2-m2-cA
36 1m4m-a2-m1-cA 112 80 0.3444 0.2768 0.3875 1.37e-13 1m4m-a2-m1-cA_1m4m-a2-m2-cA
37 6gjw-a2-m1-cC 78 65 0.2889 0.3333 0.4000 3.00e-13 6gjw-a2-m1-cB_6gjw-a2-m1-cC
38 6gjw-a2-m1-cB 78 65 0.2889 0.3333 0.4000 3.00e-13 6gjw-a2-m1-cB_6gjw-a2-m1-cC
39 2poi-a1-m2-cA 78 65 0.2889 0.3333 0.4000 3.00e-13 2poi-a1-m1-cA_2poi-a1-m2-cA
40 2poi-a1-m1-cA 78 65 0.2889 0.3333 0.4000 3.00e-13 2poi-a1-m1-cA_2poi-a1-m2-cA
41 3uef-a1-m1-cC 137 80 0.3333 0.2190 0.3750 1.43e-11 3uef-a1-m1-cA_3uef-a1-m1-cC
42 3uef-a1-m1-cA 136 80 0.3333 0.2206 0.3750 1.43e-11 3uef-a1-m1-cA_3uef-a1-m1-cC
43 8atu-a1-m1-cB 2837 88 0.3444 0.0109 0.3523 1.17e-10 8atu-a1-m1-cA_8atu-a1-m1-cB
44 8atu-a1-m1-cA 2837 88 0.3444 0.0109 0.3523 1.17e-10 8atu-a1-m1-cA_8atu-a1-m1-cB
45 5l1m-a1-m2-cA 140 44 0.1444 0.0929 0.2955 0.62 5l1m-a1-m1-cA_5l1m-a1-m2-cA
46 5l1m-a1-m1-cA 140 44 0.1444 0.0929 0.2955 0.62 5l1m-a1-m1-cA_5l1m-a1-m2-cA
47 6s0e-a1-m1-cB 496 51 0.2111 0.0383 0.3725 1.3 6s0e-a1-m1-cA_6s0e-a1-m1-cB
48 6s0e-a1-m1-cA 496 51 0.2111 0.0383 0.3725 1.3 6s0e-a1-m1-cA_6s0e-a1-m1-cB
49 6xr5-a2-m1-cG 393 58 0.2000 0.0458 0.3103 6.1 6xr5-a2-m1-cB_6xr5-a2-m1-cG
50 6xr5-a2-m1-cB 391 58 0.2000 0.0460 0.3103 6.8 6xr5-a2-m1-cB_6xr5-a2-m1-cG
51 5gn2-a2-m1-cD 272 13 0.0889 0.0294 0.6154 9.8 5gn2-a2-m1-cC_5gn2-a2-m1-cD
52 5gn2-a2-m1-cC 272 13 0.0889 0.0294 0.6154 9.8 5gn2-a2-m1-cC_5gn2-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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