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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
GPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRG
DDPWTEHAKWFPGCQFLLRSKGQEYINNIHLTHSL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2i3h-a7-m1-cB 95 95 1.0000 1.0000 1.0000 5.32e-69 2i3h-a7-m2-cA_2i3h-a7-m1-cB
2 2i3h-a6-m2-cB 95 95 1.0000 1.0000 1.0000 5.32e-69 2i3h-a6-m2-cA_2i3h-a6-m2-cB
3 2i3h-a7-m2-cA 90 90 0.9474 1.0000 1.0000 3.01e-65 2i3h-a7-m2-cA_2i3h-a7-m1-cB
4 2i3h-a6-m2-cA 90 90 0.9474 1.0000 1.0000 3.01e-65 2i3h-a6-m2-cA_2i3h-a6-m2-cB
5 1oxn-a6-m1-cB 101 94 0.8842 0.8317 0.8936 2.42e-62 1oxn-a6-m1-cD_1oxn-a6-m1-cB
6 1oxq-a9-m2-cE 94 94 0.8842 0.8936 0.8936 5.22e-62 1oxq-a9-m2-cE_1oxq-a9-m1-cD
7 1oxq-a9-m1-cD 100 93 0.8737 0.8300 0.8925 1.36e-61 1oxq-a9-m2-cE_1oxq-a9-m1-cD
8 1oxn-a7-m1-cD 100 93 0.8737 0.8300 0.8925 1.36e-61 1oxn-a7-m1-cA_1oxn-a7-m1-cD
9 1oxn-a6-m1-cD 100 93 0.8737 0.8300 0.8925 1.36e-61 1oxn-a6-m1-cD_1oxn-a6-m1-cB
10 1oxn-a7-m1-cA 99 92 0.8632 0.8283 0.8913 1.18e-60 1oxn-a7-m1-cA_1oxn-a7-m1-cD
11 4hy0-a3-m1-cE 96 94 0.5579 0.5521 0.5638 3.04e-33 4hy0-a3-m1-cE_4hy0-a3-m1-cD
12 4hy0-a3-m1-cD 98 94 0.5579 0.5408 0.5638 3.37e-33 4hy0-a3-m1-cE_4hy0-a3-m1-cD
13 3cm2-a5-m1-cG 102 94 0.5579 0.5196 0.5638 3.39e-33 3cm2-a5-m1-cE_3cm2-a5-m1-cG
14 3cm2-a5-m1-cE 102 94 0.5579 0.5196 0.5638 3.39e-33 3cm2-a5-m1-cE_3cm2-a5-m1-cG
15 5oqw-a1-m1-cB 107 94 0.5579 0.4953 0.5638 3.96e-33 5oqw-a1-m1-cA_5oqw-a1-m1-cB
16 4ec4-a5-m1-cE 108 94 0.5579 0.4907 0.5638 4.36e-33 4ec4-a5-m1-cL_4ec4-a5-m1-cE
17 5oqw-a1-m1-cA 106 94 0.5579 0.5000 0.5638 4.49e-33 5oqw-a1-m1-cA_5oqw-a1-m1-cB
18 2opy-a1-m2-cA 106 94 0.5579 0.5000 0.5638 4.49e-33 2opy-a1-m1-cA_2opy-a1-m2-cA
19 2opy-a1-m1-cA 106 94 0.5579 0.5000 0.5638 4.49e-33 2opy-a1-m1-cA_2opy-a1-m2-cA
20 4ec4-a5-m1-cL 107 94 0.5579 0.4953 0.5638 4.52e-33 4ec4-a5-m1-cL_4ec4-a5-m1-cE
21 1xb0-a1-m1-cF 103 94 0.5474 0.5049 0.5532 1.75e-32 1xb0-a1-m1-cE_1xb0-a1-m1-cF
22 1xb1-a2-m1-cB 102 94 0.5474 0.5098 0.5532 1.96e-32 1xb1-a2-m2-cF_1xb1-a2-m1-cB
23 1xb0-a1-m1-cE 93 93 0.5368 0.5484 0.5484 9.40e-32 1xb0-a1-m1-cE_1xb0-a1-m1-cF
24 2uvl-a1-m1-cB 95 85 0.4421 0.4421 0.4941 2.61e-31 2uvl-a1-m1-cA_2uvl-a1-m1-cB
25 3mup-a1-m1-cC 103 85 0.4632 0.4272 0.5176 2.70e-31 3mup-a1-m1-cD_3mup-a1-m1-cC
26 3mup-a1-m1-cD 102 85 0.4632 0.4314 0.5176 2.89e-31 3mup-a1-m1-cB_3mup-a1-m1-cD, 3mup-a1-m1-cD_3mup-a1-m1-cC
27 2uvl-a1-m1-cA 94 85 0.4421 0.4468 0.4941 2.99e-31 2uvl-a1-m1-cA_2uvl-a1-m1-cB
28 3mup-a1-m1-cB 100 85 0.4632 0.4400 0.5176 3.22e-31 3mup-a1-m1-cB_3mup-a1-m1-cD
29 1xb1-a2-m1-cA 90 90 0.5158 0.5444 0.5444 2.52e-30 1xb1-a2-m2-cF_1xb1-a2-m1-cA
30 1xb1-a2-m2-cF 89 89 0.5053 0.5393 0.5393 1.17e-29 1xb1-a2-m2-cF_1xb1-a2-m1-cA, 1xb1-a2-m2-cF_1xb1-a2-m1-cB
31 4j3y-a1-m1-cA 83 77 0.4000 0.4578 0.4935 1.36e-21 4j3y-a1-m1-cC_4j3y-a1-m1-cA
32 4j3y-a1-m1-cC 77 74 0.3895 0.4805 0.5000 3.70e-21 4j3y-a1-m1-cC_4j3y-a1-m1-cA
33 1m4m-a3-m3-cA 112 79 0.3263 0.2768 0.3924 1.45e-13 1m4m-a3-m1-cA_1m4m-a3-m3-cA
34 1m4m-a3-m1-cA 112 79 0.3263 0.2768 0.3924 1.45e-13 1m4m-a3-m1-cA_1m4m-a3-m3-cA
35 1m4m-a2-m2-cA 112 79 0.3263 0.2768 0.3924 1.45e-13 1m4m-a2-m1-cA_1m4m-a2-m2-cA
36 1m4m-a2-m1-cA 112 79 0.3263 0.2768 0.3924 1.45e-13 1m4m-a2-m1-cA_1m4m-a2-m2-cA
37 6gjw-a2-m1-cC 78 65 0.2737 0.3333 0.4000 3.53e-13 6gjw-a2-m1-cB_6gjw-a2-m1-cC
38 6gjw-a2-m1-cB 78 65 0.2737 0.3333 0.4000 3.53e-13 6gjw-a2-m1-cB_6gjw-a2-m1-cC
39 2poi-a1-m2-cA 78 65 0.2737 0.3333 0.4000 3.53e-13 2poi-a1-m1-cA_2poi-a1-m2-cA
40 2poi-a1-m1-cA 78 65 0.2737 0.3333 0.4000 3.53e-13 2poi-a1-m1-cA_2poi-a1-m2-cA
41 3uef-a1-m1-cC 137 80 0.3158 0.2190 0.3750 1.64e-11 3uef-a1-m1-cA_3uef-a1-m1-cC
42 3uef-a1-m1-cA 136 80 0.3158 0.2206 0.3750 1.73e-11 3uef-a1-m1-cA_3uef-a1-m1-cC
43 8atu-a1-m1-cB 2837 94 0.3474 0.0116 0.3511 2.44e-11 8atu-a1-m1-cA_8atu-a1-m1-cB
44 8atu-a1-m1-cA 2837 94 0.3474 0.0116 0.3511 2.44e-11 8atu-a1-m1-cA_8atu-a1-m1-cB
45 5l1m-a1-m2-cA 140 44 0.1368 0.0929 0.2955 0.66 5l1m-a1-m1-cA_5l1m-a1-m2-cA
46 5l1m-a1-m1-cA 140 44 0.1368 0.0929 0.2955 0.66 5l1m-a1-m1-cA_5l1m-a1-m2-cA
47 6s0e-a1-m1-cB 496 51 0.2000 0.0383 0.3725 1.4 6s0e-a1-m1-cA_6s0e-a1-m1-cB
48 6s0e-a1-m1-cA 496 51 0.2000 0.0383 0.3725 1.4 6s0e-a1-m1-cA_6s0e-a1-m1-cB
49 6xr5-a2-m1-cG 393 58 0.1895 0.0458 0.3103 6.8 6xr5-a2-m1-cB_6xr5-a2-m1-cG
50 6xr5-a2-m1-cB 391 58 0.1895 0.0460 0.3103 7.0 6xr5-a2-m1-cB_6xr5-a2-m1-cG

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Reference:
Jacob Schwartz et al.

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