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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
GPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRG
DDPWTEHAKWFPSCQFLLRSKGRDFVHSVQETHS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1oxn-a6-m1-cB 101 94 1.0000 0.9307 1.0000 1.00e-67 1oxn-a6-m1-cD_1oxn-a6-m1-cB
2 1oxq-a9-m2-cE 94 94 1.0000 1.0000 1.0000 1.81e-67 1oxq-a9-m2-cE_1oxq-a9-m1-cD
3 1oxq-a9-m1-cD 100 93 0.9894 0.9300 1.0000 4.23e-67 1oxq-a9-m2-cE_1oxq-a9-m1-cD
4 1oxn-a7-m1-cD 100 93 0.9894 0.9300 1.0000 4.23e-67 1oxn-a7-m1-cA_1oxn-a7-m1-cD
5 1oxn-a6-m1-cD 100 93 0.9894 0.9300 1.0000 4.23e-67 1oxn-a6-m1-cD_1oxn-a6-m1-cB
6 1oxn-a7-m1-cA 99 92 0.9787 0.9293 1.0000 3.81e-66 1oxn-a7-m1-cA_1oxn-a7-m1-cD
7 2i3h-a7-m1-cB 95 94 0.8936 0.8842 0.8936 5.17e-62 2i3h-a7-m2-cA_2i3h-a7-m1-cB
8 2i3h-a6-m2-cB 95 94 0.8936 0.8842 0.8936 5.17e-62 2i3h-a6-m2-cA_2i3h-a6-m2-cB
9 2i3h-a7-m2-cA 90 90 0.8617 0.9000 0.9000 5.61e-60 2i3h-a7-m2-cA_2i3h-a7-m1-cB
10 2i3h-a6-m2-cA 90 90 0.8617 0.9000 0.9000 5.61e-60 2i3h-a6-m2-cA_2i3h-a6-m2-cB
11 2uvl-a1-m1-cA 94 85 0.4468 0.4468 0.4941 2.52e-31 2uvl-a1-m1-cA_2uvl-a1-m1-cB
12 2uvl-a1-m1-cB 95 85 0.4468 0.4421 0.4941 2.56e-31 2uvl-a1-m1-cA_2uvl-a1-m1-cB
13 3mup-a1-m1-cD 102 85 0.4681 0.4314 0.5176 8.49e-31 3mup-a1-m1-cB_3mup-a1-m1-cD, 3mup-a1-m1-cD_3mup-a1-m1-cC
14 3mup-a1-m1-cC 103 85 0.4681 0.4272 0.5176 8.55e-31 3mup-a1-m1-cD_3mup-a1-m1-cC
15 3mup-a1-m1-cB 100 85 0.4681 0.4400 0.5176 9.55e-31 3mup-a1-m1-cB_3mup-a1-m1-cD
16 4hy0-a3-m1-cE 96 93 0.4468 0.4375 0.4516 2.29e-26 4hy0-a3-m1-cE_4hy0-a3-m1-cD
17 3cm2-a5-m1-cG 102 93 0.4468 0.4118 0.4516 2.74e-26 3cm2-a5-m1-cE_3cm2-a5-m1-cG
18 3cm2-a5-m1-cE 102 93 0.4468 0.4118 0.4516 2.74e-26 3cm2-a5-m1-cE_3cm2-a5-m1-cG
19 4hy0-a3-m1-cD 98 93 0.4468 0.4286 0.4516 2.83e-26 4hy0-a3-m1-cE_4hy0-a3-m1-cD
20 5oqw-a1-m1-cB 107 93 0.4468 0.3925 0.4516 3.22e-26 5oqw-a1-m1-cA_5oqw-a1-m1-cB
21 1xb0-a1-m1-cF 103 93 0.4468 0.4078 0.4516 3.32e-26 1xb0-a1-m1-cE_1xb0-a1-m1-cF
22 5oqw-a1-m1-cA 106 93 0.4468 0.3962 0.4516 3.42e-26 5oqw-a1-m1-cA_5oqw-a1-m1-cB
23 2opy-a1-m2-cA 106 93 0.4468 0.3962 0.4516 3.42e-26 2opy-a1-m1-cA_2opy-a1-m2-cA
24 2opy-a1-m1-cA 106 93 0.4468 0.3962 0.4516 3.42e-26 2opy-a1-m1-cA_2opy-a1-m2-cA
25 1xb1-a2-m1-cB 102 93 0.4468 0.4118 0.4516 3.49e-26 1xb1-a2-m2-cF_1xb1-a2-m1-cB
26 4ec4-a5-m1-cL 107 93 0.4468 0.3925 0.4516 3.59e-26 4ec4-a5-m1-cL_4ec4-a5-m1-cE
27 4ec4-a5-m1-cE 108 93 0.4468 0.3889 0.4516 3.61e-26 4ec4-a5-m1-cL_4ec4-a5-m1-cE
28 1xb0-a1-m1-cE 93 93 0.4468 0.4516 0.4516 3.94e-26 1xb0-a1-m1-cE_1xb0-a1-m1-cF
29 1xb1-a2-m2-cF 89 88 0.4255 0.4494 0.4545 2.45e-25 1xb1-a2-m2-cF_1xb1-a2-m1-cA, 1xb1-a2-m2-cF_1xb1-a2-m1-cB
30 1xb1-a2-m1-cA 90 88 0.4255 0.4444 0.4545 2.77e-25 1xb1-a2-m2-cF_1xb1-a2-m1-cA
31 4j3y-a1-m1-cA 83 77 0.4043 0.4578 0.4935 8.29e-22 4j3y-a1-m1-cC_4j3y-a1-m1-cA
32 4j3y-a1-m1-cC 77 74 0.3936 0.4805 0.5000 2.35e-21 4j3y-a1-m1-cC_4j3y-a1-m1-cA
33 6gjw-a2-m1-cC 78 65 0.2766 0.3333 0.4000 3.64e-13 6gjw-a2-m1-cB_6gjw-a2-m1-cC
34 6gjw-a2-m1-cB 78 65 0.2766 0.3333 0.4000 3.64e-13 6gjw-a2-m1-cB_6gjw-a2-m1-cC
35 2poi-a1-m2-cA 78 65 0.2766 0.3333 0.4000 3.64e-13 2poi-a1-m1-cA_2poi-a1-m2-cA
36 2poi-a1-m1-cA 78 65 0.2766 0.3333 0.4000 3.64e-13 2poi-a1-m1-cA_2poi-a1-m2-cA
37 1m4m-a3-m3-cA 112 74 0.3085 0.2589 0.3919 6.28e-12 1m4m-a3-m1-cA_1m4m-a3-m3-cA
38 1m4m-a3-m1-cA 112 74 0.3085 0.2589 0.3919 6.28e-12 1m4m-a3-m1-cA_1m4m-a3-m3-cA
39 1m4m-a2-m2-cA 112 74 0.3085 0.2589 0.3919 6.28e-12 1m4m-a2-m1-cA_1m4m-a2-m2-cA
40 1m4m-a2-m1-cA 112 74 0.3085 0.2589 0.3919 6.28e-12 1m4m-a2-m1-cA_1m4m-a2-m2-cA
41 8atu-a1-m1-cB 2837 76 0.2872 0.0095 0.3553 1.15e-10 8atu-a1-m1-cA_8atu-a1-m1-cB
42 8atu-a1-m1-cA 2837 76 0.2872 0.0095 0.3553 1.15e-10 8atu-a1-m1-cA_8atu-a1-m1-cB
43 3uef-a1-m1-cC 137 70 0.2872 0.1971 0.3857 2.10e-10 3uef-a1-m1-cA_3uef-a1-m1-cC
44 3uef-a1-m1-cA 136 70 0.2872 0.1985 0.3857 2.20e-10 3uef-a1-m1-cA_3uef-a1-m1-cC
45 5l1m-a1-m2-cA 140 44 0.1383 0.0929 0.2955 0.93 5l1m-a1-m1-cA_5l1m-a1-m2-cA
46 5l1m-a1-m1-cA 140 44 0.1383 0.0929 0.2955 0.93 5l1m-a1-m1-cA_5l1m-a1-m2-cA
47 6s0e-a1-m1-cB 496 51 0.2021 0.0383 0.3725 1.4 6s0e-a1-m1-cA_6s0e-a1-m1-cB
48 6s0e-a1-m1-cA 496 51 0.2021 0.0383 0.3725 1.4 6s0e-a1-m1-cA_6s0e-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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