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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=38)
GPAIDSEWEKLVRDAMTSGVSKKQFREFLDYQKWRKSQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2yal-a1-m1-cB 38 38 1.0000 1.0000 1.0000 9.23e-23 2yal-a1-m1-cB_2yal-a1-m1-cA
2 2yal-a1-m1-cA 39 38 1.0000 0.9744 1.0000 9.30e-23 2yal-a1-m1-cB_2yal-a1-m1-cA
3 1b0n-a6-m3-cA 103 36 0.8947 0.3301 0.9444 8.91e-20 1b0n-a6-m1-cA_1b0n-a6-m3-cA
4 1b0n-a6-m1-cA 103 36 0.8947 0.3301 0.9444 8.91e-20 1b0n-a6-m1-cA_1b0n-a6-m3-cA
5 1b0n-a5-m2-cA 103 36 0.8947 0.3301 0.9444 8.91e-20 1b0n-a5-m1-cA_1b0n-a5-m2-cA
6 1b0n-a5-m1-cA 103 36 0.8947 0.3301 0.9444 8.91e-20 1b0n-a5-m1-cA_1b0n-a5-m2-cA
7 5tn2-a1-m1-cD 47 35 0.8947 0.7234 0.9714 1.50e-19 5tn2-a1-m1-cC_5tn2-a1-m1-cD
8 5tn2-a1-m1-cC 47 35 0.8947 0.7234 0.9714 1.50e-19 5tn2-a1-m1-cB_5tn2-a1-m1-cC, 5tn2-a1-m1-cC_5tn2-a1-m1-cD
9 5tn2-a1-m1-cB 47 35 0.8947 0.7234 0.9714 1.50e-19 5tn2-a1-m1-cB_5tn2-a1-m1-cC
10 7d69-a1-m1-cA 90 19 0.2895 0.1222 0.5789 0.35 7d69-a1-m1-cA_7d69-a1-m1-cE
11 7d69-a1-m1-cE 99 19 0.2895 0.1111 0.5789 0.42 7d69-a1-m1-cA_7d69-a1-m1-cE
12 2zpb-a2-m2-cB 211 22 0.2368 0.0427 0.4091 4.4 2zpb-a2-m1-cB_2zpb-a2-m2-cB
13 2zpb-a2-m1-cB 211 22 0.2368 0.0427 0.4091 4.4 2zpb-a2-m1-cB_2zpb-a2-m2-cB
14 2dsj-a1-m1-cB 423 22 0.2368 0.0213 0.4091 9.2 2dsj-a1-m1-cA_2dsj-a1-m1-cB
15 2dsj-a1-m1-cA 423 22 0.2368 0.0213 0.4091 9.2 2dsj-a1-m1-cA_2dsj-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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