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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=35)
GPAMEALELELEEVESQIRALVVRRSRLRERLLAV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4c1a-a2-m1-cC 35 35 1.0000 1.0000 1.0000 3.82e-16 4c1a-a2-m1-cD_4c1a-a2-m1-cC
2 4x3n-a1-m1-cC 258 29 0.3429 0.0465 0.4138 1.9 4x3n-a1-m1-cB_4x3n-a1-m1-cC
3 4x3n-a1-m1-cB 255 29 0.3429 0.0471 0.4138 2.2 4x3n-a1-m1-cB_4x3n-a1-m1-cC
4 2z04-a1-m1-cA 305 27 0.3429 0.0393 0.4444 6.2 2z04-a1-m1-cA_2z04-a1-m1-cB
5 2z04-a1-m1-cB 321 27 0.3429 0.0374 0.4444 7.6 2z04-a1-m1-cA_2z04-a1-m1-cB
6 3hg9-a1-m1-cB 120 21 0.3143 0.0917 0.5238 8.0 3hg9-a1-m1-cA_3hg9-a1-m1-cB
7 2h1t-a1-m1-cA 185 18 0.2857 0.0541 0.5556 9.6 2h1t-a1-m1-cB_2h1t-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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