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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=22)
GPGPGITGARGLAGPGPGPGPG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1bkv-a1-m1-cA 22 22 1.0000 1.0000 1.0000 3.41e-06 1bkv-a1-m1-cA_1bkv-a1-m1-cC
2 1bkv-a1-m1-cC 23 22 1.0000 0.9565 1.0000 4.18e-06 1bkv-a1-m1-cA_1bkv-a1-m1-cC, 1bkv-a1-m1-cB_1bkv-a1-m1-cC
3 1bkv-a1-m1-cB 23 22 1.0000 0.9565 1.0000 4.18e-06 1bkv-a1-m1-cB_1bkv-a1-m1-cC
4 6los-a1-m2-cG 21 21 0.6818 0.7143 0.7143 0.21 6los-a1-m2-cH_6los-a1-m2-cG
5 6los-a1-m2-cH 19 19 0.5909 0.6842 0.6842 2.2 6los-a1-m2-cH_6los-a1-m2-cG
6 6le1-a1-m2-cA 87 18 0.5000 0.1264 0.6111 5.9 6le1-a1-m1-cA_6le1-a1-m2-cA
7 6le1-a1-m1-cA 87 18 0.5000 0.1264 0.6111 5.9 6le1-a1-m1-cA_6le1-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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