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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=13)
GPGPGLGEAGPGP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3p46-a1-m1-cC 13 13 1.0000 1.0000 1.0000 0.17 3p46-a1-m1-cA_3p46-a1-m1-cC, 3p46-a1-m1-cB_3p46-a1-m1-cC
2 3p46-a1-m1-cB 13 13 1.0000 1.0000 1.0000 0.17 3p46-a1-m1-cA_3p46-a1-m1-cB, 3p46-a1-m1-cB_3p46-a1-m1-cC
3 3p46-a1-m1-cA 13 13 1.0000 1.0000 1.0000 0.17 3p46-a1-m1-cA_3p46-a1-m1-cB, 3p46-a1-m1-cA_3p46-a1-m1-cC
4 2m32-a1-m1-cD 15 13 0.9231 0.8000 0.9231 1.0 2m32-a1-m1-cB_2m32-a1-m1-cD, 2m32-a1-m1-cC_2m32-a1-m1-cD
5 2m32-a1-m1-cC 15 13 0.9231 0.8000 0.9231 1.0 2m32-a1-m1-cB_2m32-a1-m1-cC, 2m32-a1-m1-cC_2m32-a1-m1-cD
6 2m32-a1-m1-cB 15 13 0.9231 0.8000 0.9231 1.0 2m32-a1-m1-cB_2m32-a1-m1-cC, 2m32-a1-m1-cB_2m32-a1-m1-cD
7 4bj3-a1-m1-cE 13 13 0.8462 0.8462 0.8462 1.8 4bj3-a1-m1-cC_4bj3-a1-m1-cE, 4bj3-a1-m1-cD_4bj3-a1-m1-cE
8 4bj3-a1-m1-cD 13 13 0.8462 0.8462 0.8462 1.8 4bj3-a1-m1-cC_4bj3-a1-m1-cD, 4bj3-a1-m1-cD_4bj3-a1-m1-cE
9 4bj3-a1-m1-cC 13 13 0.8462 0.8462 0.8462 1.8 4bj3-a1-m1-cC_4bj3-a1-m1-cD, 4bj3-a1-m1-cC_4bj3-a1-m1-cE
10 1q7d-a1-m1-cC 15 13 0.8462 0.7333 0.8462 2.3 1q7d-a1-m1-cA_1q7d-a1-m1-cC, 1q7d-a1-m1-cB_1q7d-a1-m1-cC
11 1q7d-a1-m1-cB 15 13 0.8462 0.7333 0.8462 2.3 1q7d-a1-m1-cA_1q7d-a1-m1-cB, 1q7d-a1-m1-cB_1q7d-a1-m1-cC
12 1q7d-a1-m1-cA 15 13 0.8462 0.7333 0.8462 2.3 1q7d-a1-m1-cA_1q7d-a1-m1-cB, 1q7d-a1-m1-cA_1q7d-a1-m1-cC
13 1dzi-a1-m1-cD 15 13 0.8462 0.7333 0.8462 2.3 1dzi-a1-m1-cB_1dzi-a1-m1-cD, 1dzi-a1-m1-cC_1dzi-a1-m1-cD
14 1dzi-a1-m1-cC 15 13 0.8462 0.7333 0.8462 2.3 1dzi-a1-m1-cB_1dzi-a1-m1-cC, 1dzi-a1-m1-cC_1dzi-a1-m1-cD
15 1dzi-a1-m1-cB 15 13 0.8462 0.7333 0.8462 2.3 1dzi-a1-m1-cB_1dzi-a1-m1-cC, 1dzi-a1-m1-cB_1dzi-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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