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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=17)
GPGPGPGKLGPGPGPGP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3pod-a3-m3-cC 17 17 1.0000 1.0000 1.0000 0.012 3pod-a3-m3-cA_3pod-a3-m3-cC, 3pod-a3-m3-cB_3pod-a3-m3-cC
2 3pod-a3-m3-cB 17 17 1.0000 1.0000 1.0000 0.012 3pod-a3-m3-cB_3pod-a3-m3-cC
3 3pod-a3-m3-cA 17 17 1.0000 1.0000 1.0000 0.012 3pod-a3-m3-cA_3pod-a3-m3-cC
4 3pon-a3-m3-cB 19 17 1.0000 0.8947 1.0000 0.014 3pon-a3-m3-cA_3pon-a3-m3-cB
5 3pon-a3-m3-cA 19 17 1.0000 0.8947 1.0000 0.014 3pon-a3-m3-cA_3pon-a3-m3-cB, 3pon-a3-m3-cC_3pon-a3-m3-cA
6 4lor-a1-m1-cC 16 16 0.9412 1.0000 1.0000 0.035 4lor-a1-m1-cB_4lor-a1-m1-cC
7 4lor-a1-m1-cB 16 16 0.9412 1.0000 1.0000 0.035 4lor-a1-m1-cB_4lor-a1-m1-cC
8 3pon-a3-m3-cC 18 16 0.9412 0.8889 1.0000 0.044 3pon-a3-m3-cC_3pon-a3-m3-cA
9 2drt-a1-m1-cB 19 17 0.9412 0.8421 0.9412 6.7 2drt-a1-m1-cA_2drt-a1-m1-cB
10 2drt-a1-m1-cA 19 17 0.9412 0.8421 0.9412 6.7 2drt-a1-m1-cA_2drt-a1-m1-cB
11 1zt4-a3-m1-cA 272 9 0.4118 0.0257 0.7778 9.8 1zt4-a3-m1-cA_1zt4-a3-m1-cC

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Reference:
Jacob Schwartz et al.

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