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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=18)
GPGPGPGPALGPGPGPGP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5y46-a1-m1-cC 18 18 1.0000 1.0000 1.0000 0.006 5y46-a1-m1-cA_5y46-a1-m1-cC, 5y46-a1-m1-cB_5y46-a1-m1-cC
2 5y46-a1-m1-cB 18 18 1.0000 1.0000 1.0000 0.006 5y46-a1-m1-cA_5y46-a1-m1-cB, 5y46-a1-m1-cB_5y46-a1-m1-cC
3 5y46-a1-m1-cA 18 18 1.0000 1.0000 1.0000 0.006 5y46-a1-m1-cA_5y46-a1-m1-cB, 5y46-a1-m1-cA_5y46-a1-m1-cC
4 5y45-a1-m1-cF 18 18 1.0000 1.0000 1.0000 0.006 5y45-a1-m1-cD_5y45-a1-m1-cF, 5y45-a1-m1-cE_5y45-a1-m1-cF
5 5y45-a1-m1-cE 18 18 1.0000 1.0000 1.0000 0.006 5y45-a1-m1-cD_5y45-a1-m1-cE, 5y45-a1-m1-cE_5y45-a1-m1-cF
6 5y45-a1-m1-cD 18 18 1.0000 1.0000 1.0000 0.006 5y45-a1-m1-cD_5y45-a1-m1-cE, 5y45-a1-m1-cD_5y45-a1-m1-cF
7 3k9d-a2-m1-cB 454 11 0.4444 0.0176 0.7273 8.0 3k9d-a2-m1-cD_3k9d-a2-m1-cB
8 3k9d-a2-m1-cD 453 11 0.4444 0.0177 0.7273 8.5 3k9d-a2-m1-cD_3k9d-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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